1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tggatgcatgctctgtatagatgcttttatgtttgtctactctacattatctttaggatatgtgattgaaggcgatttgaattttgatattttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTAAAGAACTTAAAGGCCATGAGAATATTGTTCACTTCTACAATGCGTTTG
species | Oryza sativa |
transcript | LOC_Os02g03410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|88341932|gb|CI644269.1|CI644269
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|88342437|gb|CI645959.1|CI645959
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|58590583|gb|CF988891.1|CF988891
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|29644214|gb|CB649221.1|CB649221
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|218492077|gb|FG943382.1|FG943382
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|29657420|gb|CB653695.1|CB653695
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|88330524|gb|CI635146.1|CI635146
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|88310411|gb|CI659201.1|CI659201
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|88407152|gb|CI581239.1|CI581239
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTEST: gi|88334162|gb|CI641213.1|CI641213
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
EST: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAG ATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
genomic: ACCGGGCCTCCGGTGACCGCGTCGCCGTCAAGCGCATCGACAAGGCCAAGgtactactaa ... tttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTT
attatctttaggatatgtgattgaaggcgatttgaattttgatattttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTAAAGAACTTAAAGGCCATGAGAATATTGTTCACTTCTACAATGCGTTTG
ttttgat putative branch site (score: 4)
atttgaattttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatgcatgctctgtatagatgcttttatgtttgtctactctacattatctttaggatatgtgattgaaggcgatttgaattttgatattttatggcagATGGTTCGCCCTGTTGCTGTGGAGGATGTAAAGAGAGAAGTGAAGATTCTTAAAGAACTTAAAGGCCATGAGAATATTGTTCACTTCTACAATGCGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC