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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtcccgcacatgctgatactatgaactagggttttctttttgttcaagagctgacaaagcattgtttccattcctgttttccagATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTT

Basic information

species Oryza sativa
transcript LOC_Os02g02750.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G466281_T02 (Zea mays), 3'ss of exon 2
gtgagagtcccg--cacatgctgatactatgaactagggttttctttttgttcaagagctgacaaagcattgtttccattcctgttttccagATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTT
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gtaagagttcaattcacatactgttacaatgaact---gtgcttcttttgttgaaatcctga----gtattgatgc-att--tgttttccagATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548371|gb|CA767504.2|CA767504
EST:     TAACTTTATTCTTCTTTTCCCATGTTGGAATCGACCGCAGGCCAAATATG                         ATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGC
genomic: TAACTTTATTCTTCTTTTCCCATGTTGGAATCGACCGCAGGCCAAATATGgtgagagtcc ... tgttttccagATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttctttttgttcaagagctgacaaagcattgtttccattcctgttttccagATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTT
                   agctgac  putative branch site (score: 3)
                                ttgtttccattcctgt  putative PPT
       tttttgtt  TA-rich tract