1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcccaaaaaggcccatgtcccatgttagatccgccgccactgtgctactgatcttctccgaattgtataatttaacgcatatgctcttttgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAAC
species | Oryza sativa |
transcript | LOC_Os02g02530.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88577301|gb|CI673872.1|CI673872
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|2443050|gb|C74821.1|C74821
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88348832|gb|CI631919.1|CI631919
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGEST: gi|88726755|gb|CI750410.1|CI750410
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCAT-CCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGG
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88337571|gb|CI630868.1|CI630868
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTACACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88348465|gb|CI629954.1|CI629954
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88403791|gb|CI611446.1|CI611446
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88580575|gb|CI697511.1|CI697511
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88727565|gb|CI751220.1|CI751220
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88735041|gb|CI758549.1|CI758549
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88423516|gb|CI579228.1|CI579228
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88354459|gb|CI624849.1|CI624849
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88429086|gb|CI689966.1|CI689966
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88726787|gb|CI750442.1|CI750442
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: AGGGTCGCCGCCGCCCGTTCCTCTTGCCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88327413|gb|CI645199.1|CI645199
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTG-CTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88351626|gb|CI628846.1|CI628846
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCNGCAT-CATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88352998|gb|CI630176.1|CI630176
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCC-GCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGNNCGCATC-ATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88337525|gb|CI630822.1|CI630822
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGC-CGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88354915|gb|CI615796.1|CI615796
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88742402|gb|CI765910.1|CI765910
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|87012215|gb|CI291670.1|CI291670
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|11565217|gb|AU165853.1|AU165853
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88385325|gb|CI630426.1|CI630426
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: GGGTCGCCGCCCGTTCGTTCCTCTTGCCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88826272|gb|CI776837.1|CI776837
genomic: GGGTCGCCG-CCGTTCGTTCCTCTTG-CTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88358491|gb|CI617577.1|CI617577
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88578945|gb|CI687910.1|CI687910
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88570289|gb|CI661464.1|CI661464
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88392635|gb|CI625457.1|CI625457
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88302084|gb|CI667930.1|CI667930
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88394586|gb|CI605927.1|CI605927
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88362983|gb|CI614339.1|CI614339
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88358819|gb|CI649368.1|CI649368
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88730490|gb|CI754103.1|CI754103
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|29631478|gb|CB636487.1|CB636487
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88739638|gb|CI763146.1|CI763146
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88577660|gb|CI674258.1|CI674258
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGAEST: gi|88379001|gb|CI681829.1|CI681829
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
ctactgatcttctccgaattgtataatttaacgcatatgctcttttgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAAC
ctcttttgtatctc CT-rich tract
aattgtataatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccaaaaaggcccatgtcccatgttagatccgccgccactgtgctactgatcttctccgaattgtataatttaacgcatatgctcttttgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAAC
- cccaaaa
- - - - - - - catgtcc
- - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - gccactg
- - - - - - - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatgc