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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcccaaaaaggcccatgtcccatgttagatccgccgccactgtgctactgatcttctccgaattgtataatttaacgcatatgctcttttgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAAC

Basic information

species Oryza sativa
transcript LOC_Os02g02530.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88577301|gb|CI673872.1|CI673872
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88348832|gb|CI631919.1|CI631919
EST:     AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGG
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCAT-CCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGG
EST: gi|29629871|gb|CB634880.1|CB634880
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTTGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88726755|gb|CI750410.1|CI750410
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88337571|gb|CI630868.1|CI630868
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTACACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88348465|gb|CI629954.1|CI629954
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88403791|gb|CI611446.1|CI611446
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88580575|gb|CI697511.1|CI697511
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88727565|gb|CI751220.1|CI751220
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88735041|gb|CI758549.1|CI758549
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88423516|gb|CI579228.1|CI579228
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88354459|gb|CI624849.1|CI624849
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88350597|gb|CI631320.1|CI631320
EST:     AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCANT-CTG                         CGGGGACTAAACCCTGAAGCATCTGGGCTGTTGTTTCACCACTTGTAGTG
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCA-TCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCA-TTGTAGTG
EST: gi|88429086|gb|CI689966.1|CI689966
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88726787|gb|CI750442.1|CI750442
EST:     AGGGTCGCCGCCGCCCGTTCCTCTTGCCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTG-CTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88327413|gb|CI645199.1|CI645199
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88351626|gb|CI628846.1|CI628846
EST:     AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCNGCAT-CATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCC-GCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88352998|gb|CI630176.1|CI630176
EST:     AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGNNCGCATC-ATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: AGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGC-CGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88337525|gb|CI630822.1|CI630822
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88302084|gb|CI667930.1|CI667930
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88354915|gb|CI615796.1|CI615796
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88742402|gb|CI765910.1|CI765910
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|87012215|gb|CI291670.1|CI291670
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88394586|gb|CI605927.1|CI605927
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|11565217|gb|AU165853.1|AU165853
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88385325|gb|CI630426.1|CI630426
EST:     GGGTCGCCGCCCGTTCGTTCCTCTTGCCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: GGGTCGCCG-CCGTTCGTTCCTCTTG-CTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88826272|gb|CI776837.1|CI776837
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88358491|gb|CI617577.1|CI617577
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88298801|gb|CI565998.1|CI565998
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88578945|gb|CI687910.1|CI687910
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88364823|gb|CI614441.1|CI614441
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|58660337|gb|CK049017.1|CK049017
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88570289|gb|CI661464.1|CI661464
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88392635|gb|CI625457.1|CI625457
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|58674882|gb|CK063569.1|CK063569
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|2443050|gb|C74821.1|C74821
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88362983|gb|CI614339.1|CI614339
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88358819|gb|CI649368.1|CI649368
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88730490|gb|CI754103.1|CI754103
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88739638|gb|CI763146.1|CI763146
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88577660|gb|CI674258.1|CI674258
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
EST: gi|88379001|gb|CI681829.1|CI681829
EST:     CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTG                         CGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA
genomic: CAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 53 (upstream exon), 23 (downstream exon)
Score: 1

GCGACGAGACCAGATCGATCGCCGAGGTATCGCCTCCCTCCCCGACCGAGCAGGGTCGCCGCCGTTCGTTCCTCTTGCTGCTTCCGCCGCATCCATCCTGgtgagcacat ... tgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactgatcttctccgaattgtataatttaacgcatatgctcttttgtatctcagCGGGGACTAAACCTTGAAGCATCTGGGCTGTTGTTTCACCATTGTAGTGGATTCCACTTCGGAACTGAACTTTTCTAGTTGTTTCCGTGACAATGAAAAC
                                       ctcttttgtatctc  CT-rich tract
                aattgtataatttaa  TA-rich tract