1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acatgaattatatgcctgtgtatatgtgtgccaatacacgataaatggtgaattgatagaacatgtagcttacatactgccactgctcctctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTACCGTGATCGGTATTGATCTTGGTACAACCTACTCGTGTGTCGGTGTGTA
species | Oryza sativa |
transcript | LOC_Os02g02410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTAEST: gi|1631642|gb|C19371.1|C19371
genomic: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
EST: ATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTTGCATTTNCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTAEST: gi|29630263|gb|CB635272.1|CB635272
genomic: ATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
EST: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTAEST: gi|396941184|gb|HO188393.1|HO188393
genomic: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
EST: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTTGCATTTTCTGTTGCAAAGGAGGAGACCAAGAAGCTCGGTAEST: gi|29630765|gb|CB635774.1|CB635774
genomic: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
EST: CGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTTCTGCTCGCAG GATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTAEST: gi|570171|gb|D41020.1|D41020
genomic: CGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
EST: GATGGATCGGGTTCGCGGATGCGCGTNCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTAEST: gi|29628702|gb|CB633713.1|CB633713
genomic: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
EST: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTAEST: gi|29630767|gb|CB635776.1|CB635776
genomic: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
EST: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAG GATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
genomic: GATGGATCGGGTTCGCGGATGCGCGTTCCTGCTCGGCGTCCTGCTCGCAGgtgcgatctc ... ctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTA
tggtgaattgatagaacatgtagcttacatactgccactgctcctctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTACCGTGATCGGTATTGATCTTGGTACAACCTACTCGTGTGTCGGTGTGTA
agcttac putative branch site (score: 201)
ctgctcctctgttt putative PPT
aattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgaattatatgcctgtgtatatgtgtgccaatacacgataaatggtgaattgatagaacatgtagcttacatactgccactgctcctctgtttgcagGATCCCTGTTTGCATTTTCTGTTGCGAAGGAGGAGACCAAGAAGCTCGGTACCGTGATCGGTATTGATCTTGGTACAACCTACTCGTGTGTCGGTGTGTA
-catgaat
- - - - - -atgcctg
- - - - - - - - - - - - tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgcc