1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctggaattgttcttagtgctttgcatgtatcgaggcaattttgtcttcgatttcagtcaaacaaatgatgtattcaaacatgcctttgtcatttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCTGATGGATGTACACAAGAAACTTCTCCTGGCCTCCCTCAGCTGTGTACT
species | Oryza sativa |
transcript | LOC_Os02g02040.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCTTTTTGGAGATGGAGCTCCATCACCATGGAACCAGCAGCGTCTGAG AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCEST: gi|86909185|gb|CI302777.1|CI302777
genomic: GACCTTTTTGGAGATGGAGCTCCATCACCATGGAACCAGCAGCGTCTGAGgttaggtccc ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: GACCTTTTTGGAGATGGAGCTCCATCACCATGGAACCAGCAGCGTCTGAG AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCEST: gi|58588335|gb|CF986643.1|CF986643
genomic: GACCTTTTTGGAGATGGAGCTCCATCACCATGGAACCAGCAGCGTCTGAGgttaggtccc ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: GACCTTTTTGGAGATGGAGCTCCATCACCATGGAACCAGCAGCGTCTGAG AGCATAGCAATCAGATGGGGTCAATCTGATGGTTTTTCCCCATTCTCCAGC
genomic: GACCTTTTTGGAGATGGAGCTCCATCACCATGGAACCAGCAGCGTCTGAGgttaggtccc ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
cttcgatttcagtcaaacaaatgatgtattcaaacatgcctttgtcatttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCTGATGGATGTACACAAGAAACTTCTCCTGGCCTCCCTCAGCTGTGTACT
cctttgtcatttttc CT-rich tract
aaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctggaattgttcttagtgctttgcatgtatcgaggcaattttgtcttcgatttcagtcaaacaaatgatgtattcaaacatgcctttgtcatttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCTGATGGATGTACACAAGAAACTTCTCCTGGCCTCCCTCAGCTGTGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - -ttgttct
- - - - - - - tagtgct
- - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcct