1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctggaattgttcttagtgctttgcatgtatcgaggcaattttgtcttcgatttcagtcaaacaaatgatgtattcaaacatgcctttgtcatttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCTGATGGATGTACACAAGAAACTTCTCCTGGCCTCCCTCAGCTGTGTACT
species | Oryza sativa |
transcript | LOC_Os02g02040.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT AGCATAGCAATCAGATGGGGTCAATCTGATGGTTTTTCCCCATTCTCCAGCEST: gi|88311583|gb|CI574800.1|CI574800
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: TGTCGTAGGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCC-ATTCTCCAGCEST: gi|88430269|gb|CI567288.1|CI567288
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCC-ATTCTCCAGCEST: gi|88356168|gb|CI627616.1|CI627616
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
EST: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT AGCATAGCAATCAGATAGGTTCAATCTGATGGTTTTTCCEST: gi|88377283|gb|CI600438.1|CI600438
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCC
EST: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTT AGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
genomic: TGTCGTACGCTTCGTCTGGATTTGATTAGCGTTAACAAGTCAAGTCAGTTgtaagtaaac ... catttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGC
cttcgatttcagtcaaacaaatgatgtattcaaacatgcctttgtcatttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCTGATGGATGTACACAAGAAACTTCTCCTGGCCTCCCTCAGCTGTGTACT
cctttgtcatttttc CT-rich tract
aaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctggaattgttcttagtgctttgcatgtatcgaggcaattttgtcttcgatttcagtcaaacaaatgatgtattcaaacatgcctttgtcatttttcagAGCATAGCAATCAGATGGGTTCAATCTGATGGTTTTTCCCCATTCTCCAGCTGATGGATGTACACAAGAAACTTCTCCTGGCCTCCCTCAGCTGTGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG