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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accttgtgatttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT

Basic information

species Oryza sativa
transcript LOC_Os02g01560.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S461_1V6.1 (Physcomitrella patens), 3'ss of exon 1
accttgtgatttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctga----tcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
  | ||  |  | |   ||    ||  ||   ||  ||    |      | |||  |   |||| |  |     | | |||  |||| |||       |   ||||  | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| || || 
--cctgcaagcttaaaatgggggtggtttagggttttgaagttggttgatgatgaggaagtttgagtcgtgttctgagttctgtttctcttgtgc--gttttagGCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTC

upper sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
accttgtg-atttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccg--taataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
   | ||  |  ||||||| ||  |  |||  ||| || |   |   |   |   || |    |||  || ||   |   ||   ||| ||      |  |||||  | ||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||| | ||||| || |||
-tttcgtttacgtcattgt-tcgcttcatttttgtggt-cggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT

upper sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S38_194V6.1 (Physcomitrella patens), 3'ss of exon 1
-----accttgtgatttcattgtgtcattgtattcatgtcgtgct-actctgcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
        ||  |    | |  | |  |||||   |    | | |   ||   ||| | || ||   ||||   || |   |  |||||       ||    | ||||  | ||||||||||||||| |||||||||||||||| ||||  ||||||||||| |||||| | ||||| || || 
ttatcggtttacgtaaacttgctttacttgtacgaagagtgcgtttgttcctgagtgacgt-gtggcttgttacgaactaattgttttct-----tgtgtctctagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGGATGCTTGACAAGTTGGGTGGTGCCTTC

upper sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 3'ss of exon 1
-accttgtgatttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
 |  |||   |   |   | |  ||| | |  ||   || |  | | |  || | |  || |||  | || |  | |  ||||   |     |     |||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  | ||||| || |||
gaggttggtttcgtagcatatttttgaaat-gtgcgctgatttttttcttttttttatttttttacgttgtttttgttttttttgttatttttttcttcagGCTCGTGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAATTGGGTGGCGCCTTT

upper sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S282_25V6.1 (Physcomitrella patens), 3'ss of exon 1
-----accttgtgatttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
         || || |        ||  | | ||      |    |     | |||   ||| ||  |||||| | ||| |  |      ||      || ||||||  | ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| || || 
atgctggagtgagaatcagggtcttcggtattttgggactggctgatcaccctgttcaattggtacgtgtgctaaacatgtgttgcggtgttg-----attccagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTC

upper sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ14824 (Selaginella moellendorffii), 3'ss of exon 1
accttgtgatttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
                                            ||       |  | |||    |  ||||  || |  |||   |   ||     ||||   | ||   |||||||||||| |||  ||||||||| |||||||||||||||||   |||||| || || || |||
-------------------------------------------gtgagagcgcgcggctatcgcgg--gatc--ttacgattcttgtgttgtg----cagGTGCGCGGGCCGAAGAAGCATCTCAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTT

upper sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
lower sequence: EFJ26570 (Selaginella moellendorffii), 3'ss of exon 1
accttgtgatttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
                                            ||       |  | |||    |  ||||  || |  |||   |   ||     ||||   | ||   ||||||||||||||||  ||||||||| |||||||||||||||||   |||||| || || || || 
-------------------------------------------gtgagagcgcgcggctatcgcgg--gatc--ttacgattcttgtgttgtg----cagGTGCGCGGGCCGAAGAAGCATCTGAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678801|gb|CF307040.1|CF307040
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58598713|gb|CK009241.1|CK009241
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|29657966|gb|CB654241.1|CB654241
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58675592|gb|CK064279.1|CK064279
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58658121|gb|CK046801.1|CK046801
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACGATG                         GCAAGGGG-TTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|38482204|gb|CF966256.1|CF966256
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGA-CTA--CCGA-CTCGCAACCATG                         GCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58681135|gb|CK069822.1|CK069822
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218495459|gb|FG950146.1|FG950146
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218490691|gb|FG945219.1|FG945219
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58696229|gb|CK084916.1|CK084916
EST:     CAGAGCACGGCGA-CTAGCCCGAGCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTTGAAGAGGCTCAATGCGCCCAAGCATTG
genomic: CAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATC-TGAAGAGGCTCAATGCGCCCAAGCATTG
EST: gi|58683951|gb|CK072638.1|CK072638
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58678695|gb|CK067382.1|CK067382
EST:     CAGGCGGCGGCGGCAGAGCACGGCGAGGCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: CAGGCGGCGGCGGCAGAGCACGGCGA-CCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218497795|gb|FG950008.1|FG950008
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218479608|gb|FG966063.1|FG966063
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58677186|gb|CK065873.1|CK065873
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|88315773|gb|CI617246.1|CI617246
EST:     CAGGCGGCTGGTGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTTG
genomic: CAGGCGGC-GGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCA-TTG
EST: gi|218492913|gb|FG948475.1|FG948475
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|2312066|gb|C28221.1|C28221
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCANGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218482952|gb|FG948114.1|FG948114
EST:     TCGCAACCATG                         GCAATGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: TCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58679961|gb|CK068648.1|CK068648
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58657856|gb|CK046536.1|CK046536
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCGCGGAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58604163|gb|CK014691.1|CK014691
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58599482|gb|CK010010.1|CK010010
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|33795164|gb|CF323455.1|CF323455
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|4968768|gb|AU065672.1|AU065672
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58603020|gb|CK013548.1|CK013548
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58600199|gb|CK010727.1|CK010727
EST:     GGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|10109160|gb|AU065212.2|AU065212
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58675481|gb|CK064168.1|CK064168
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218483029|gb|FG953126.1|FG953126
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218489228|gb|FG963522.1|FG963522
EST:     GCAGAGCACGGCGACCTAGCCCGACCTCGTAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218486385|gb|FG949950.1|FG949950
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58694556|gb|CK083243.1|CK083243
EST:     ACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: ACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218487571|gb|FG950380.1|FG950380
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58684768|gb|CK073455.1|CK073455
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|33794358|gb|CF323065.1|CF323065
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58606021|gb|CK034054.1|CK034054
EST:     GCAGGCGGCGGCGGCAGAGCACGG-GAGGTAGCCCGAGCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|4880159|gb|AU064458.1|AU064458
EST:     GCAGGCGGCGGCGGCAGANCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58602882|gb|CK013410.1|CK013410
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58686311|gb|CK074998.1|CK074998
EST:     GCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GGAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|25801389|gb|CA757350.1|CA757350
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218479965|gb|FG945836.1|FG945836
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58601472|gb|CK012000.1|CK012000
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|33381471|gb|CF196814.1|CF196814
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|55411270|gb|CV723646.1|CV723646
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAATCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58598744|gb|CK009272.1|CK009272
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58598952|gb|CK009480.1|CK009480
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|27577325|gb|CB000020.1|CB000020
EST:     ACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGACTAGGCTCAATGCGCCCAAGCATTGG
genomic: ACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58684079|gb|CK072766.1|CK072766
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218486783|gb|FG948675.1|FG948675
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGA-CTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218504242|gb|FG948960.1|FG948960
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58602001|gb|CK012529.1|CK012529
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCGAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGC-AAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
EST: gi|58596442|gb|CK006970.1|CK006970
EST:     GGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58683341|gb|CK072028.1|CK072028
EST:     CAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAAGCCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
genomic: CAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAA-CCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
EST: gi|58678411|gb|CK067098.1|CK067098
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58676236|gb|CK064923.1|CK064923
EST:     CAGTGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
genomic: CAG-GCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGG-GGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
EST: gi|58598991|gb|CK009519.1|CK009519
EST:     GCAGGCGGCGGCGGCAGAGCACGGGGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|13896943|gb|AU183279.1|AU183279
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58595491|gb|CK006019.1|CK006019
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218486731|gb|FG954849.1|FG954849
EST:     TCGCAACCATG                         GCAAGGGGTTTGAAGAA-CATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: TCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58603838|gb|CK014366.1|CK014366
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGAGCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58590692|gb|CF989000.1|CF989000
EST:     CAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAAGCAGTG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
genomic: CAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCA-TGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTG
EST: gi|218489438|gb|FG968542.1|FG968542
EST:     GCAGGCGGCGGCGGCAGA-CACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|10930923|gb|AU161197.1|AU161197
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58604536|gb|CK015064.1|CK015064
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGAGCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|396941190|gb|HO188399.1|HO188399
EST:     GCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58590141|gb|CF988449.1|CF988449
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58670414|gb|CK059100.1|CK059100
EST:     CAGGCGGCGGCGGCATGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: CAGGCGGCGGCGGCA-GAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|38472791|gb|CF956923.1|CF956923
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|569313|gb|D40162.1|D40162
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|33794997|gb|CF323378.1|CF323378
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|38469781|gb|CF953912.1|CF953912
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|33677989|gb|CF306228.1|CF306228
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218494879|gb|FG967110.1|FG967110
EST:     GCA-GCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58664091|gb|CK052777.1|CK052777
EST:     GGCGGCAGAGCACGGCGA-CTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58666929|gb|CK055615.1|CK055615
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|3766562|gb|AU030672.1|AU030672
EST:     GCAGGCNGCGGCGGCAGANCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58692978|gb|CK081665.1|CK081665
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218492767|gb|FG946020.1|FG946020
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218483014|gb|FG962976.1|FG962976
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAGGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58677672|gb|CK066359.1|CK066359
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58601836|gb|CK012364.1|CK012364
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58603155|gb|CK013683.1|CK013683
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58682638|gb|CK071325.1|CK071325
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218498283|gb|FG961056.1|FG961056
EST:     CAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCACGA-CTCGCAACCATG                         GC-AGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCGGCAAGCATTG
genomic: CAGGCGGCGGCGGCAGAGCACGGCGACCTAGCC-CGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGC-CCAAGCATTG
EST: gi|33795648|gb|CF323694.1|CF323694
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58588896|gb|CF987204.1|CF987204
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGG-TTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58603988|gb|CK014516.1|CK014516
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGAGGTGGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58685184|gb|CK073871.1|CK073871
EST:     GGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|427475|gb|D23541.1|D23541
EST:     GCAGGCGGCGGCGGCAGANCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|218494001|gb|FG947410.1|FG947410
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58601990|gb|CK012518.1|CK012518
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|58682499|gb|CK071186.1|CK071186
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGAGCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
EST: gi|33675017|gb|CF303256.1|CF303256
EST:     GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATG                         GCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG
genomic: GCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 319

CTCTTGTCATCTCGGCGGCGGCGCGGCGCGGAGCAGAGGAGGACGAAGCAGCAGGCGGCGGCGGCAGAGCACGGCGACCTAGCCCGACCTCGCAACCATGgtgagccccc ... gtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT
                                     cccttac  putative branch site (score: 319)
                         tcatttccttttccct  CT-rich tract
         ttgttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
accttgtgatttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccgtaataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- -ttgtgat
- - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - -ctgcagt
- - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctga