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...ggtattgttatcgtaatcaatctaattctcttttggttcagctaaccttgttatgcagctacatccgtcttattttcatttatgtatcactgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGTTCTCGCTGCGCAATGCATAGAAGCTGCACTCACGAGGCTCCATCTCCT
species | Oryza sativa |
transcript | LOC_Os01g73970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|88347448|gb|CI637388.1|CI637388
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|88321718|gb|CI672859.1|CI672859
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|29659847|gb|CB656122.1|CB656122
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|88576799|gb|CI673325.1|CI673325
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|88340221|gb|CI652570.1|CI652570
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|88739320|gb|CI762828.1|CI762828
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACAACTCCACCTATCACCGTTATGEST: gi|88664581|gb|CI699791.1|CI699791
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|29663567|gb|CB659842.1|CB659842
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAGG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGEST: gi|29656275|gb|CB652550.1|CB652550
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
EST: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAG GTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
genomic: GACTCACAGATTCTAGGGTTTCGCCCCTCGCGGCGATTCCACCACCCAAGgtacgttatt ... tgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATG
ccttgttatgcagctacatccgtcttattttcatttatgtatcactgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGTTCTCGCTGCGCAATGCATAGAAGCTGCACTCACGAGGCTCCATCTCCT
ctgtccttc CT-rich tract
ttattttcatttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtattgttatcgtaatcaatctaattctcttttggttcagctaaccttgttatgcagctacatccgtcttattttcatttatgtatcactgtccttcagGTTTGCGTTCCTTCTGTTGGTGCATACACGACTCCACCTATCACCGTTATGTTCTCGCTGCGCAATGCATAGAAGCTGCACTCACGAGGCTCCATCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - tcttttg
- - - - - - - - - - - - - - - - - - ttcagct
- - - - - - - - - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat