1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaattcccaattaatttgctactgcctgcttccactgctgcagtgcttatgatatatcatgcctactgtagtatatatgtaatgtaatacaaggattaagtatgtccttcctgaatgatgatggatgattgctgagtttctccttccttggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTTTGCTAG
species | Oryza sativa |
transcript | LOC_Os01g73910.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGNCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|58590372|gb|CF988680.1|CF988680
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGAGGGAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGCGCTTAATGATATGGGCAAGGCEST: gi|29624825|gb|CB629836.1|CB629836
genomic: CGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGA-CAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGC
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|88688286|gb|CI731862.1|CI731862
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|2427812|gb|C72275.1|C72275
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|88411775|gb|CI571267.1|CI571267
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|33380975|gb|CF196318.1|CF196318
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCEST: gi|88664563|gb|CI699578.1|CI699578
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGC
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|13806000|gb|AU181304.1|AU181304
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGGAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|88762070|gb|CI771626.1|CI771626
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|58591227|gb|CF989535.1|CF989535
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AAGACACTGCTGCTGAGAGCAGTTCCACGGCTTAATGATATGGGCAAGGCTEST: gi|88312036|gb|CI580201.1|CI580201
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGGTEST: gi|29683738|gb|CB680013.1|CB680013
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAACAG AACACACTGCTGCTGAGAGCAATTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|88454163|gb|CI694086.1|CI694086
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|13806135|gb|AU181375.1|AU181375
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAG AACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTEST: gi|88689580|gb|CI733156.1|CI733156
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
EST: CCGCCCGGGGCCTTGATGCAGAAGACTTCCGCCATCCGCTGGACAAGCAC AACACACTGNTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
genomic: CCGCCCGGGGCCTTGATGCAGACGACTTCCGCCATCCGCTGGACAAGCAGgtgaattccc ... tggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCT
gtccttcctgaatgatgatggatgattgctgagtttctccttccttggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTTTGCTAG
tttctccttccttggc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattcccaattaatttgctactgcctgcttccactgctgcagtgcttatgatatatcatgcctactgtagtatatatgtaatgtaatacaaggattaagtatgtccttcctgaatgatgatggatgattgctgagtttctccttccttggcctgcagAACACACTGCTGCTGAGAGCAGTTCCAGGGCTTAATGATATGGGCAAGGCTTTGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG