1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcttttctagctttatagtatgtatgtgtccaagctatgatattcatacaaattgcttcataaataaatgtgttatgttggaatggcatttttttccagATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCTTCAAAATG
species | Oryza sativa |
transcript | LOC_Os01g73840.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCG ATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGEST: gi|41883562|gb|BX928487.1|BX928487
genomic: ACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGgtgagacact ... ttttttccagATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATG
EST: ACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCG ATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGEST: gi|58611159|gb|CK038871.1|CK038871
genomic: ACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGgtgagacact ... ttttttccagATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATG
EST: ACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCG ATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATG
genomic: ACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGgtgagacact ... ttttttccagATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATG
catacaaattgcttcataaataaatgtgttatgttggaatggcatttttttccagATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCTTCAAAATG
catttttttcc CT-rich tract
ataaataaatgtgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttttctagctttatagtatgtatgtgtccaagctatgatattcatacaaattgcttcataaataaatgtgttatgttggaatggcatttttttccagATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCTTCAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - atgtatg
- - - - - - - - - - - - - - -tccaagc
- - - - - - - - - - - - - - - - - - - - - - -catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgttg