1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcggttcaatttccatcactgctgctaaataaatactaattaatcatcacccaacacatgcatgttttgtactatgtttcctatgtgaatattagatcaacaatcattgctttaatgtttatgtctgtctaatttcagCACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATGAAACTTGTTGGGGAAGATGAACTCTCCGATGAGTTTATTCGCGAGATGG
species | Oryza sativa |
transcript | LOC_Os01g73670.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAG CACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATGEST: gi|33677743|gb|CF305982.1|CF305982
genomic: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAGgtcggttcaa ... ctaatttcagCACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATG
EST: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAG CACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATGEST: gi|58678956|gb|CK067643.1|CK067643
genomic: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAGgtcggttcaa ... ctaatttcagCACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATG
EST: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAG CACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATGEST: gi|58658641|gb|CK047321.1|CK047321
genomic: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAGgtcggttcaa ... ctaatttcagCACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATG
EST: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAG CACTTGTCACAACAGGGCTAATACTGAGTTGGTAGAGGATTCTTACCACATEST: gi|27577720|gb|CB000415.1|CB000415
genomic: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAGgtcggttcaa ... ctaatttcagCACTTGTCACAACA-ACCTAATACTGAGTTGGTAGAGGATTCTTACCACAT
EST: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAG CACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATG
genomic: TCACTACCCTCTATTTTCAGCATGCGCGCTATCGCGTCAGATACTATAAGgtcggttcaa ... ctaatttcagCACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATG
tgtgaatattagatcaacaatcattgctttaatgtttatgtctgtctaatttcagCACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATGAAACTTGTTGGGGAAGATGAACTCTCCGATGAGTTTATTCGCGAGATGG
gtctaat putative branch site (score: 3)
tctgtct CT-rich tract
tttaatgtttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggttcaatttccatcactgctgctaaataaatactaattaatcatcacccaacacatgcatgttttgtactatgtttcctatgtgaatattagatcaacaatcattgctttaatgtttatgtctgtctaatttcagCACTTGTCACAACAACCTAATACTGAGTTGGTAGAGGATTCTTACCACATGAAACTTGTTGGGGAAGATGAACTCTCCGATGAGTTTATTCGCGAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG