1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcttatattcatggatgtctttctaattaatttgatagttactgttaacataatattgatattccgtttctaaaaattgtttgtatgtttatttgaatagGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACTTG
species | Oryza sativa |
transcript | LOC_Os01g73234.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGGCCGCGCCGTCCCGCCGTGGCGCCACGCTGCGG GTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAG
genomic: GCGGCCGCGCCGTCCCGCCGTGGCGCCACGCTGCGGgtgagccccc ... atttgaatagGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAG
taacataatattgatattccgtttctaaaaattgtttgtatgtttatttgaatagGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACTTG
ttctaaa putative branch site (score: 2)
tttattt putative PPT
taaaaattgtttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttatattcatggatgtctttctaattaatttgatagttactgttaacataatattgatattccgtttctaaaaattgtttgtatgtttatttgaatagGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - attcatg
- - - - - - - - - - - - - - - - - - - -tactgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt