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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgctgctcacctcgtagtggtcgatggggatctgagtattcgcgaccacatgaaacaagcgaaaacgattctaattgatggatgggtttctgctattctggcattagTCTCGACAAGTCTTGAGGAGCGATACGATGTGATTGTGGTTGGAGGAGGCCATGCCGGATGTGAGGCCGCGCTTGCGTCGGCTCGTCTTGGTGCGCGCAC

Basic information

species Oryza sativa
transcript LOC_Os01g72980.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72980.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G481548_T01 (Zea mays), 3'ss of exon 1
gtaacgctgctcacctcgtagtggtcgatggggatctgagtattcgcgaccacatgaaacaagcgaaaacga--ttctaattgatggatgggtttctgctattctggcattagTC--TCGACAAGTCTTG----AGGAGCGATACGATGTGATTGTGGTTGGAGGAGGCCATGCCGGATGTGAGGCCGCGCTTGCGTCGGCTCGTCTTGGTGCGCGCAC
                 |||  | ||  |     ||  ||  ||  |     |  |  | || || | | ||  | || | ||    ||    |||||   | || |  |   ||   ||    |    |    ||||||| ||||| || |||||||| ||||| |||||||||||||| |||||||| ||||| |||||||| ||            
-----------------gtaaagctctttt----tcacagctttgactgatgctggcgagaaacggagaagaggtgcttactgccaaattt-cttctgtggtgctagATTCGATCGGCCGGTTGGATCCGCGCCAGGAGCGGTACGACGTCATTGTGGTCGGAGGCGGCCATGCCGGATGCGAGGCCGCCCTTGCTTCGGCTCGCCT------------

upper sequence: LOC_Os01g72980.1 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv04s0044g01690.t01 (Vitis vinifera), 3'ss of exon 1
gtaacgctgctcacctcgtagtggtcgatggggatctgagt-attcgcgaccacatgaaacaagcgaaaacgattctaattgatggatgggtttctgctattctggcattagTCTCGACAAGTCT--TGAGGAGCGATACGATGTGATTGTGGTTGGAGGAGGCCATGCCGGATGTGAGGCCGCGCTTGCGTCGGCTCGTCTTGGTGCGCGCAC
    |  |||  |     |  |  |   | ||  |    || | |  |    |  | ||||     |  |  |   | ||| ||| |    || |   |      | | |  |   |    | |   | | ||  |||| ||||| ||||||||||||||||||||||| || ||||| || || ||||| || |||||| |            
--ccctttgcataaacaattttatttattaggtttgcctgtcacttcccttgaattaaaacttcaaatcaataaaatgatttatgtactcattacatttcagGCAGGAATGATAATGTTGGGGCAGATAATGAAAGATATGATGTTATTGTGGTTGGAGGAGGCCATGCAGGCTGTGAAGCTGCCCTTGCATCTGCTCGTTT------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaagcgaaaacgattctaattgatggatgggtttctgctattctggcattagTCTCGACAAGTCTTGAGGAGCGATACGATGTGATTGTGGTTGGAGGAGGCCATGCCGGATGTGAGGCCGCGCTTGCGTCGGCTCGTCTTGGTGCGCGCAC
                                        ctattct  CT-rich tract
               attctaatt  TA-rich tract