1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acctatatttcccctggtttacatacacagccagtgcgcttttagcagtatgttttacatgctttactttacattaatcgtaatttttttttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAGATTCAACAAGATGAAG
species | Oryza sativa |
transcript | LOC_Os01g71630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATATCTGTTTGAGGNNNNNNNGGACGGGGTCTCCCTTCCTGCAACAGA ACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAEST: gi|88421497|gb|CI618621.1|CI618621
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
EST: GGATATCTGTTTGAGGNNNNNNNGGACGGGGTCTCCCTTCCTGCAACAGA ACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAEST: gi|88447616|gb|CI577133.1|CI577133
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
EST: GGATATCTGTTTGAGGAACAAAAGGACGGGGTCTCCCTTCCTGCA-CAGA ACCGCGTGATGATGTTACCGTCTGATGTGACGTCCCTTAEST: gi|88571115|gb|CI662488.1|CI662488
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTA
EST: GGATATCTGTTTGAGGNNNNNNNGGACGGGGTCTCCCTTCCTGCAACAGA ACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAEST: gi|88325963|gb|CI649814.1|CI649814
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
EST: GGATATCTGTTTGAGGNNNNNNNGGACGGGGTCTCCCTTCCTGCAACAGA ACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAEST: gi|163928005|gb|EG714277.1|EG714277
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
EST: GGATATCTGTTTGAGGNNNNNNNGGACGGGGTCTCCCTTCCTGCAACAGA ACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAEST: gi|88367908|gb|CI572629.1|CI572629
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
EST: GGATATCTGTTTGAGGNNNNNNNGGACGGGGTCTCCCTTCCTGCAACAGA ACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAEST: gi|88413306|gb|CI581321.1|CI581321
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
EST: GGATATCTGTTTGAGGNNNNNNNGGACGGGGTCTCCCTTCCTGCAACAGA ACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
genomic: GGATATCTGTTTGAGGAAAAAAAGGACGGGGTCTCCCTTCCTGCAACAGAgtacggatga ... ttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGA
cagtatgttttacatgctttactttacattaatcgtaatttttttttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAGATTCAACAAGATGAAG
cattaat putative branch site (score: 113)
tttttttttttttgc putative PPT
tttactttacattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctatatttcccctggtttacatacacagccagtgcgcttttagcagtatgttttacatgctttactttacattaatcgtaatttttttttttttgcagACCGCGTGATGATGTTACCGTTTGATGTGACGTACCTTAGTTTGTACGCGAGATTCAACAAGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG