1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtctactcagcatttaggccatgatcgatcaactccatgttgttaacaccattcacagttagcctacaagttcataacaggtgttttctgtctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATTACCTTAGTTCGCAGGAGCCTGGTGATGAATCACAGATCAACGCTATTG
species | Oryza sativa |
transcript | LOC_Os01g71256.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88307309|gb|CI641947.1|CI641947
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88335716|gb|CI647072.1|CI647072
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88575386|gb|CI669531.1|CI669531
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88309590|gb|CI655958.1|CI655958
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88332253|gb|CI639280.1|CI639280
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88411010|gb|CI606229.1|CI606229
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88574228|gb|CI665997.1|CI665997
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88333450|gb|CI640482.1|CI640482
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88363380|gb|CI643238.1|CI643238
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88309058|gb|CI654677.1|CI654677
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCCCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATEST: gi|88341839|gb|CI642983.1|CI642983
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
EST: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAG TATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
genomic: CCAGCGCCTCGTTCACCTATCCAAAACTAAAGGTGGCATCCCCTTCTCAGgtaattttcc ... tctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGAT
acaccattcacagttagcctacaagttcataacaggtgttttctgtctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATTACCTTAGTTCGCAGGAGCCTGGTGATGAATCACAGATCAACGCTATTG
tcataac putative branch site (score: 2)
ttttctgtctatttc putative PPT
ttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctactcagcatttaggccatgatcgatcaactccatgttgttaacaccattcacagttagcctacaagttcataacaggtgttttctgtctatttcagTATTACAGCATGCACATGATGACTTCTGCAAGCGGATGTGCAAAGTTGGATTACCTTAGTTCGCAGGAGCCTGGTGATGAATCACAGATCAACGCTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - -gccatga
- - - - - - - - - - - - - - - - - -catgttg
- - - - - - - - - - - - - - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctaca