1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttttaatcattattaagcttacggcatgatgaagttttgccattttatttttatttataggaatttgtcaattaatattttctgatttcttctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACAATTTGCAATATTTGGCTGTATCAAGTGATAAAGGAACAATACATGTGT
species | Oryza sativa |
transcript | LOC_Os01g70780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAATGCTGCCGAGGGCAATCTCCTGCAGGAA GTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACEST: gi|58592896|gb|CF991204.1|CF991204
genomic: ACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
EST: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAA GTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACEST: gi|86494779|gb|CI137412.1|CI137412
genomic: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
EST: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCA-GAA GTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACEST: gi|86858814|gb|CI275062.1|CI275062
genomic: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
EST: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAA GTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACEST: gi|396941451|gb|HO188660.1|HO188660
genomic: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
EST: GGACACTTGTTAGAATCTACAATGCTGCTGAGGGCAATCTCCTGCAGGAA GTACGGAGAGGTGTTGATAGAGCAGAAATATATEST: gi|29640442|gb|CB645451.1|CB645451
genomic: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATAT
EST: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAA GTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACEST: gi|86505908|gb|CI148541.1|CI148541
genomic: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
EST: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAA GTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACEST: gi|86504653|gb|CI147286.1|CI147286
genomic: GGACACTTGTTAGAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
EST: GAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAA GTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
genomic: GAATCTACAATGCTGCCGAGGGCAATCTCCTGCAGGAAgtaagctccc ... tctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAAC
tatttttatttataggaatttgtcaattaatattttctgatttcttctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACAATTTGCAATATTTGGCTGTATCAAGTGATAAAGGAACAATACATGTGT
ttctgat putative branch site (score: 18)
ttttctgatttcttct CT-rich tract
ttatttataggaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaatcattattaagcttacggcatgatgaagttttgccattttatttttatttataggaatttgtcaattaatattttctgatttcttctgttatagGTACGGAGAGGTGCTGATAGAGCAGAAATATATAGCTTGGCGTTCTCCAACAATTTGCAATATTTGGCTGTATCAAGTGATAAAGGAACAATACATGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - catgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgat