1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttcgcatcaccatatggttttaaactgaaagccaagcaagagttgcgatgcattggaaagattgttggtgtcatctattgattgtgctctgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
species | Oryza sativa |
transcript | LOC_Os01g70140.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACGTCCGCCTCCCAG GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGEST: gi|86599379|gb|CI251337.1|CI251337
genomic: AGGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCTCCCAGgtactcaatc ... tgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
EST: GGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCT-CCANG GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGEST: gi|3762498|gb|AU029250.1|AU029250
genomic: GGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCTCCCA-Ggtactcaatc ... tgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
EST: GGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCTCCCAG GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGEST: gi|3762499|gb|AU029251.1|AU029251
genomic: GGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCTCCCAGgtactcaatc ... tgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
EST: GGCACGCCCTACGAGGGCGGCA-CTTCGTCATCGACATCCGCCTCCCAG GTGGTTACCCCTTTGAGCCTCCTAAGATNCAGTTTATCCCCAAAGTNTGEST: gi|3767494|gb|AU031604.1|AU031604
genomic: GGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCTCCCAGgtactcaatc ... tgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
EST: GGCACNCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCTCCCCAG GTGGTTACCCCTTTGGAG-CTCCTAAGATGCAGTTTATCACCAAAGTATG
genomic: GGCACGCCCTACGAGGGCGGCACCTTCGTCATCGACATCCGCCT-CCCAGgtactcaatc ... tgattggcagGTGGTTACCCCTTT-GAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
gcgatgcattggaaagattgttggtgtcatctattgattgtgctctgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
tattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcatcaccatatggttttaaactgaaagccaagcaagagttgcgatgcattggaaagattgttggtgtcatctattgattgtgctctgattggcagGTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - gcatcac
- - - - - - - - - - - - - - - -gccaagc
- - - - - - - - - - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgt