1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agcttatttctgattgtttatttgatcttacctcatggctagtacattatactcattatactgctcattcacataatggtgatgcttaacaaaagaaaagCTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTGAAACATGGGAATCTGATTTTCACTCAGCTCCTCGTGAGAGGAGGGTATC
species | Oryza sativa |
transcript | LOC_Os01g70060.2 |
intron # | 1 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: CTTGGCGCAGAAGCTTTTGAAGCTCAATAATTCACGACAAAGTATAGAGA CTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTGEST: gi|87008922|gb|CI304865.1|CI304865
genomic: CTTGGCGCAGAAGCTTTTGAAGCTCAATAATTCACGACAAAGTATAGAGAgtatccttcc ... aaaagaaaagCTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTG
EST: CTTGGCGCAGAAGCTTTTGAAGCTCAATAATTCACGACAAAGTATAGAGA CTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTGEST: gi|58659612|gb|CK048292.1|CK048292
genomic: CTTGGCGCAGAAGCTTTTGAAGCTCAATAATTCACGACAAAGTATAGAGAgtatccttcc ... aaaagaaaagCTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTG
EST: CTTGGCGCAGAAGCTTTTGAAGCTCAATAATTCACGACAAAGTATAGAGA CTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTG
genomic: CTTGGCGCAGAAGCTTTTGAAGCTCAATAATTCACGACAAAGTATAGAGAgtatccttcc ... aaaagaaaagCTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTG
attatactcattatactgctcattcacataatggtgatgcttaacaaaagaaaagCTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTGAAACATGGGAATCTGATTTTCACTCAGCTCCTCGTGAGAGGAGGGTATC
atgcttaac putative branch site
ttaacaaaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttatttctgattgtttatttgatcttacctcatggctagtacattatactcattatactgctcattcacataatggtgatgcttaacaaaagaaaagCTTTGTCACATTGGTGTGTCTTTCATTATCGACACTGCCGACAAGTTGTTGAAACATGGGAATCTGATTTTCACTCAGCTCCTCGTGAGAGGAGGGTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -ctgattg
- - - - - - - - - - - - - - - - -catggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct