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...tcaatatgacatgcataaccggttaatagtgcattgatgcgaagtgagtaaaaccgaaatgctagcgggcagcattgcaactgaagagtatttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTGACGATTCCGGATCACACAACCGTCTACGAGGCTTGTCGGAGGATGGCT
species | Oryza sativa |
transcript | LOC_Os01g69900.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTEST: gi|88347705|gb|CI655058.1|CI655058
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTEST: gi|88299883|gb|CI579944.1|CI579944
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTEST: gi|29626335|gb|CB631346.1|CB631346
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTEST: gi|88387626|gb|CI585329.1|CI585329
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTEST: gi|29641958|gb|CB646965.1|CB646965
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTEST: gi|88443781|gb|CI592006.1|CI592006
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGAAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAACAGGTTAAGATTGTCCAAGGCACTEST: gi|88387159|gb|CI577945.1|CI577945
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTEST: gi|29660358|gb|CB656633.1|CB656633
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
EST: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCA GTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
genomic: GCCGCCGCCGGCAGGAGGTCCTCCGCTTCCATCTCCCGCGCCTCGCAGCAgtacggactc ... tttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACT
gagtaaaaccgaaatgctagcgggcagcattgcaactgaagagtatttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTGACGATTCCGGATCACACAACCGTCTACGAGGCTTGTCGGAGGATGGCT
tttgcctc CT-rich tract
agtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatatgacatgcataaccggttaatagtgcattgatgcgaagtgagtaaaaccgaaatgctagcgggcagcattgcaactgaagagtatttgcctcagGTCGATGACCGGGGAGAGGACCGTGAAGAGGTTAAGATTGTCCAAGGCACTGACGATTCCGGATCACACAACCGTCTACGAGGCTTGTCGGAGGATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - acatgca
- - - - - - - - - - - - - - - - -ttgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - aaaccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca