1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttacatggtttattcttgacagtctgaacaaaagaataggtcagagtttcttgcaggtgtcatgaatttgttttgatggattatgaatcaacatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAATTCCCCTACATACTCCCAAGTGATCCACAGGCTCCCAGTCACCCATGT
species | Oryza sativa |
transcript | LOC_Os01g68770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACG GTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAEST: gi|29644288|gb|CB649295.1|CB649295
genomic: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACGgtaagcgaag ... acatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCA
EST: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACG GGACTGGAATTAACGAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAEST: gi|88401933|gb|CI593645.1|CI593645
genomic: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACGgtaagcgaag ... acatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCA
EST: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCATCTGCGTCTACAACG GTACTGGAATTAACAAGCCGGATTAACTGGGTAAGGTGGACGTGGACCCCAEST: gi|58669621|gb|CK058307.1|CK058307
genomic: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACGgtaagcgaag ... acatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCA
EST: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACG GTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAEST: gi|29641234|gb|CB646241.1|CB646241
genomic: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACGgtaagcgaag ... acatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCA
EST: GGAGAACGCCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACG GTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAEST: gi|29660708|gb|CB656983.1|CB656983
genomic: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACGgtaagcgaag ... acatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCA
EST: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACG GTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAEST: gi|88372721|gb|CI612649.1|CI612649
genomic: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACGgtaagcgaag ... acatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCA
EST: GGAGAATGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACG GTACTTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCC
genomic: GGAGAAGGGCCCGAGGGAGAAGCTCCTCTACGTCACCTGCGTCTACAACGgtaagcgaag ... acatgaacagGTACT-GGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCC
gtttcttgcaggtgtcatgaatttgttttgatggattatgaatcaacatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAATTCCCCTACATACTCCCAAGTGATCCACAGGCTCCCAGTCACCCATGT
ttttgat putative branch site (score: 61)
aatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacatggtttattcttgacagtctgaacaaaagaataggtcagagtttcttgcaggtgtcatgaatttgttttgatggattatgaatcaacatgaacagGTACTGGAATTAACAAGCCGGATTACCTGGGTACGGTGGACGTGGACCCCAATTCCCCTACATACTCCCAAGTGATCCACAGGCTCCCAGTCACCCATGT
ttacatg
- - - - - -attcttg
- - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatca