1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atcttgctatttcatcaactgatcctgagtgatgatttgatgcgaaattaagttcaagttggttgtagaataatgatgtcgtgttttctgatatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAAACTGCAGACCAGGCAACGGCGCCTGTTCCTGATACACTAGAGAACCCTC
species | Oryza sativa |
transcript | LOC_Os01g68380.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTG CTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAAEST: gi|88731826|gb|CI753546.1|CI753546
genomic: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTGgtatgtctgt ... atatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAA
EST: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTG CTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAAEST: gi|29644363|gb|CB649370.1|CB649370
genomic: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTGgtatgtctgt ... atatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAA
EST: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTG CTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAAEST: gi|33676310|gb|CF304549.1|CF304549
genomic: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTGgtatgtctgt ... atatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAA
EST: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTG CTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAAEST: gi|58674168|gb|CK062854.1|CK062854
genomic: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTGgtatgtctgt ... atatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAA
EST: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTG CTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAA
genomic: CGTCGTCGTCGTCCTCGCGGAAGAAGGATCTCCACGCGGGGAAGAAGCTGgtatgtctgt ... atatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAA
aattaagttcaagttggttgtagaataatgatgtcgtgttttctgatatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAAACTGCAGACCAGGCAACGGCGCCTGTTCCTGATACACTAGAGAACCCTC
ttctgat putative branch site (score: 4)
tagaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcttgctatttcatcaactgatcctgagtgatgatttgatgcgaaattaagttcaagttggttgtagaataatgatgtcgtgttttctgatatatccagCTGGCGGAGTACCGTAAGAAGAAGAACAAGGCGGCGAAGAAGGCTGCTGAAACTGCAGACCAGGCAACGGCGCCTGTTCCTGATACACTAGAGAACCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- cttgcta
- - - - - - - - - ctgatcc
- - - - - - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - ttgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgt