1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcttctcctctttcatcagcaaattcatgaatccttttagctggagatagtttctgtggtcaaattctggttggcgtcgggcgtgttctgacgaggaaatctccgtttaattctttgtttgtttggtttgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGGAGAGGGACGCCGCCGCCGGCGGCGGCAAGGTCCGCAGGGCCGTCGTCC
species | Oryza sativa |
transcript | LOC_Os01g68020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTT GCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGEST: gi|88745782|gb|CI769142.1|CI769142
genomic: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTTgtaagcttct ... tgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAG
EST: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTT GCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGEST: gi|29676444|gb|CB672719.1|CB672719
genomic: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTTgtaagcttct ... tgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAG
EST: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTT GCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGEST: gi|218504052|gb|FG943732.1|FG943732
genomic: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTTgtaagcttct ... tgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAG
EST: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTT GCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGEST: gi|88688555|gb|CI732131.1|CI732131
genomic: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTTgtaagcttct ... tgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAG
EST: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTT GCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAG
genomic: TCATCACCTCCTCCGGCCGCCGGAGGATCCCCGCGCATTCCACTGTTCTTgtaagcttct ... tgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAG
tgttctgacgaggaaatctccgtttaattctttgtttgtttggtttgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGGAGAGGGACGCCGCCGCCGGCGGCGGCAAGGTCCGCAGGGCCGTCGTCC
tttaattctttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttctcctctttcatcagcaaattcatgaatccttttagctggagatagtttctgtggtcaaattctggttggcgtcgggcgtgttctgacgaggaaatctccgtttaattctttgtttgtttggtttgatcaccagGCGTCGGCGTCGCCGGTGCTGGAGAGCATCCTGCAGCGCCGCCTGAAGAAGGAGAGGGACGCCGCCGCCGGCGGCGGCAAGGTCCGCAGGGCCGTCGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG