1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgatcttgctgaacaggtgttcctccatattgctgcatgatgcctcatgccttgatcagggtattggtgactattgagctatatttactgttcttcacagGTGGAGGTTGAATTCACTGATGGTAGCTCATTCCATCTGTCAGCTGAATTTCTAAGAGTACATAGTCCAGCAGCTGACAGCAAAATAATATCAGTATCTG
species | Oryza sativa |
transcript | LOC_Os01g67730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCACCCGCCCAGATCG GTGGA-GTTGAATTCACTGATGGTAGCTCATTCCATCTGTCAGCTGAATTT
genomic: CTGCACCCGCCCAGATCGgtgagttcct ... ttcttcacagGTGGAGGTTGAATTCACTGATGGTAGCTCATTCCATCTGTCAGCTGAATTT
catgccttgatcagggtattggtgactattgagctatatttactgttcttcacagGTGGAGGTTGAATTCACTGATGGTAGCTCATTCCATCTGTCAGCTGAATTTCTAAGAGTACATAGTCCAGCAGCTGACAGCAAAATAATATCAGTATCTG
ccttgat putative branch site (score: 5)
ctgttcttc putative PPT
tatatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcttgctgaacaggtgttcctccatattgctgcatgatgcctcatgccttgatcagggtattggtgactattgagctatatttactgttcttcacagGTGGAGGTTGAATTCACTGATGGTAGCTCATTCCATCTGTCAGCTGAATTTCTAAGAGTACATAGTCCAGCAGCTGACAGCAAAATAATATCAGTATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - tgctgaa
- - - - - - - - - - tcctcca
- - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - -catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttactg