1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggaacatttgttaatctgtgttactcataatattgtggagcttctattgaatgcattacagtagaaaaaaaaaggtcaactatgatatttatgttgcagGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAG
species | Oryza sativa |
transcript | LOC_Os01g67520.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTG GAAAGTGTCTGATGTTTTTATAGTTTGAAACTGGTGCTAGCTGAAAGGAAAEST: gi|5004575|gb|AU069750.1|AU069750
genomic: GGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGgtaaatccga ... tatgttgcagGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAA
EST: GGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTG GAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAEST: gi|88299187|gb|CI570157.1|CI570157
genomic: GGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGgtaaatccga ... tatgttgcagGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAA
EST: GGTTGCTCCGGCGGCATTTGGTGCC-GTCCGGCGCGGCGGCGCTT-GTTG GAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGATAGCTGAAAGGAAAEST: gi|88351080|gb|CI620740.1|CI620740
genomic: GGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGgtaaatccga ... tatgttgcagGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAA
EST: GGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTG GAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAA
genomic: GGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGgtaaatccga ... tatgttgcagGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAA
tattgaatgcattacagtagaaaaaaaaaggtcaactatgatatttatgttgcagGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAG
aactatgatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaacatttgttaatctgtgttactcataatattgtggagcttctattgaatgcattacagtagaaaaaaaaaggtcaactatgatatttatgttgcagGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - acatttg
- - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa