1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggattcagtcttcatctactggcaaagcaaattcatgtggattcaactagttgtgtcaaccagcttttctgattaattcatttgcttgtttggttgcagAATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG
species | Oryza sativa |
transcript | LOC_Os01g66960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCCTCTGCTCCGACTGCAACGCCCTCGCGGAGTTCGTCAAGGACCAAG AATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTAEST: gi|27577793|gb|CB000488.1|CB000488
genomic: CGCCCTCTGCTCCGACTGCAACGCCCTCGCGGAGTTCGTCAAGGACCAAGgtatgggggt ... ttggttgcagAATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTA
EST: TCGTCAAGGACCAAG AATTGGTGGAGGACTGCCCTTAATGTTGTACAGAGGATTCAGATGATTCTA
genomic: TCGTCAAGGACCAAGgtatgggggt ... ttggttgcagAATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTA
aactagttgtgtcaaccagcttttctgattaattcatttgcttgtttggttgcagAATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG
gattaat putative branch site (score: 10)
cttgttt putative PPT
ttttctgattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggattcagtcttcatctactggcaaagcaaattcatgtggattcaactagttgtgtcaaccagcttttctgattaattcatttgcttgtttggttgcagAATTGGTGGAGGACTGCCGTAAATGTTGTACAGAGGATTCAGATGATTCTATCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - ctactgg
- - - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcttg