1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatatcttgcctgcacctgcagtgaacttcaggttcttgaatctttgatgggcatcaagttctcctgaactcaagaactgtgttgttgcatgcttgcagTGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCTCCGGTGAGCACAGCTGGCTCGTCTTTCTTGAG
species | Oryza sativa |
transcript | LOC_Os01g66830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAG TGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCTEST: gi|88724752|gb|CI748011.1|CI748011
genomic: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAGgtatatcttg ... atgcttgcagTGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCT
EST: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAC TGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCTEST: gi|88426051|gb|CI604340.1|CI604340
genomic: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAGgtatatcttg ... atgcttgcagTGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCT
EST: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAG TGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCTEST: gi|66924825|gb|CX111673.1|CX111673
genomic: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAGgtatatcttg ... atgcttgcagTGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCT
EST: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAG TGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCT
genomic: GGACGTCGTCGAGCTGACCCTCCTCGCCGGCGCTCAGGAGAAGGGCGCAGgtatatcttg ... atgcttgcagTGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCT
ttgatgggcatcaagttctcctgaactcaagaactgtgttgttgcatgcttgcagTGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCTCCGGTGAGCACAGCTGGCTCGTCTTTCTTGAG
ctttgat putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcttgcctgcacctgcagtgaacttcaggttcttgaatctttgatgggcatcaagttctcctgaactcaagaactgtgttgttgcatgcttgcagTGTGCTTGGATGGGAGCCCGCCGGGGTACCACCTGCAGAGAGGCTTCGGCTCCGGTGAGCACAGCTGGCTCGTCTTTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG