1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgcgcttttactccctttatcttgcttaattgcttctgccatgaattgctaagagggaggtgttgcatggttgtacatgtacatgtttaatttgtgaagGTGGATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATCGAGAACAAGACGAGCCGTCAGGTGACCTTCTGCAAGCGCAGGAATGGGC
species | Oryza sativa |
transcript | LOC_Os01g66290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATCGATCAACTCACAGCTCGATCCAGCCCCCTCCAGATCTTCAGATCG GTGGATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATCEST: gi|88718773|gb|CI742283.1|CI742283
genomic: CCATCGATCAACTCACAGCTCGATCCAGCCCCCTCCAGATCTTCAGATCGgtaagaaaac ... atttgtgaagGTGGATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATC
EST: CCATCGATCAACTCACAGCTCGATCCAGCCCCCTCCAGATCTTCAGATCG GTGGATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATC
genomic: CCATCGATCAACTCACAGCTCGATCCAGCCCCCTCCAGATCTTCAGATCGgtaagaaaac ... atttgtgaagGTGGATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATC
attgctaagagggaggtgttgcatggttgtacatgtacatgtttaatttgtgaagGTGGATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATCGAGAACAAGACGAGCCGTCAGGTGACCTTCTGCAAGCGCAGGAATGGGC
gtttaat putative branch site (score: 30)
tacatgtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcgcttttactccctttatcttgcttaattgcttctgccatgaattgctaagagggaggtgttgcatggttgtacatgtacatgtttaatttgtgaagGTGGATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATCGAGAACAAGACGAGCCGTCAGGTGACCTTCTGCAAGCGCAGGAATGGGC
- - - - -tactccc
- - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - - ttctgcc
- - - - - - - - - - - - - - - - - - - - - - - ttgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacatg