1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gatactggcctgccttcttgagttatgaatttttgctacagctgctgatgcatttgtgagcttctgatcatgattgtgtattttgcttttttggctttagGAAAATGTTCGTCGTGGCCAGTTGATATCGACTAATATCAAATCAAGGCCATTGCTGTGCCCTCCATGCCGTTGTGTTCAGATGGCATTGGCCAACACAA
species | Oryza sativa |
transcript | LOC_Os01g66240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCACCGGGGAGTAGGCTTCGCGCCGCCTCGCGCGCTCGCCAG GAAAATGTTCGTCGTGGCCAGTTGATATCGACTAATATCAAATCAAGGCCA
genomic: GTCACCGGGGAGTAGGGTTCGCGCCGCCTCGCGCGCTCGCCAGgtacccctca ... ttggctttagGAAAATGTTCGTCGTGGCCAGTTGATATCGACTAATATCAAATCAAGGCCA
tgatgcatttgtgagcttctgatcatgattgtgtattttgcttttttggctttagGAAAATGTTCGTCGTGGCCAGTTGATATCGACTAATATCAAATCAAGGCCATTGCTGTGCCCTCCATGCCGTTGTGTTCAGATGGCATTGGCCAACACAA
ttctgat putative branch site (score: 2)
tattttgctttttt putative PPT
tattttgctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatactggcctgccttcttgagttatgaatttttgctacagctgctgatgcatttgtgagcttctgatcatgattgtgtattttgcttttttggctttagGAAAATGTTCGTCGTGGCCAGTTGATATCGACTAATATCAAATCAAGGCCATTGCTGTGCCCTCCATGCCGTTGTGTTCAGATGGCATTGGCCAACACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - ggcctgc
- - - - - - -cttcttg
- - - - - - - - - - - - - - - - -tgctaca
- - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgt