1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agtttttctgggattaatttgctatattctggtagcatcaagttcagattgggatttgacatcagtgcagagtccctgataacttcactgttgcttgcagGTTAGCTGTATTCGGAGCTTCAGATTATCCAAAAAAAAAAAAAGAATGGACGGTGAGCAGCTGATGAGTGGTGAATTGGACAATTCGTTCAACGCACTCA
species | Oryza sativa |
transcript | LOC_Os01g65920.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAGAGTTTCTTCTTTCTTCGCGTGTTCTTGGAGGAGGAGCGAGGACTAG GTTAGCTGTATTCGGAGCTTCAGATTATCCNNNNNNNNNNNNNGAATGGACEST: gi|29646356|gb|CB651363.1|CB651363
genomic: CTAGAGTTTCTTCTTTCTTCGCGTGTTCTTGGAGGAGGAGCGAGGACTAGgtgagtaaga ... ttgcttgcagGTTAGCTGTATTCGGAGCTTCAGATTATCCAAAAAAAAAAAAAGAATGGAC
EST: CTAGAGTTTCTTCTTTCTTCGCGTGTTCTTGGAGGAGGAGCGAGGACTAG GTTAGCTGTATTCGGAGCTTCAGATTATCCNNNNNNNNNNNNNNGAATGGAEST: gi|14981277|gb|BI305955.1|BI305955
genomic: CTAGAGTTTCTTCTTTCTTCGCGTGTTCTTGGAGGAGGAGCGAGGACTAGgtgagtaaga ... ttgcttgcagGTTAGCTGTATTCGGAGCTTCAGATTATCC-AAAAAAAAAAAAAGAATGGA
EST: CTAGAGTTTCTTCTTTCTTCGCGTGTTCTTGGAGGAGGAGCGAGGACTAG GTTAGCTGTATTCGGAGCTTCAGATTATCC
genomic: CTAGAGTTTCTTCTTTCTTCGCGTGTTCTTGGAGGAGGAGCGAGGACTAGgtgagtaaga ... ttgcttgcagGTTAGCTGTATTCGGAGCTTCAGATTATCC
agattgggatttgacatcagtgcagagtccctgataacttcactgttgcttgcagGTTAGCTGTATTCGGAGCTTCAGATTATCCAAAAAAAAAAAAAGAATGGACGGTGAGCAGCTGATGAGTGGTGAATTGGACAATTCGTTCAACGCACTCA
tgataac putative branch site (score: 25)
ataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttttctgggattaatttgctatattctggtagcatcaagttcagattgggatttgacatcagtgcagagtccctgataacttcactgttgcttgcagGTTAGCTGTATTCGGAGCTTCAGATTATCCAAAAAAAAAAAAAGAATGGACGGTGAGCAGCTGATGAGTGGTGAATTGGACAATTCGTTCAACGCACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -ttttctg
- - - - - - - - -tttgcta
- - - - - - - - - - - - tattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtccctg