Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgggtgctcctagagctacctactttgctggttaatttttggtgaagttttacactactgtgaattcgttctaagttttttgttggctccgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT

Basic information

species Oryza sativa
transcript LOC_Os01g65880.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88299745|gb|CI577247.1|CI577247
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88299494|gb|CI574607.1|CI574607
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|117218417|gb|CT858164.1|CT858164
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88571732|gb|CI663105.1|CI663105
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88337815|gb|CI632317.1|CI632317
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCNTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58671599|gb|CK060285.1|CK060285
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88372296|gb|CI619626.1|CI619626
EST:     TAAAGGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|55827951|gb|AU064019.2|AU064019
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58686371|gb|CK075058.1|CK075058
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88338521|gb|CI645775.1|CI645775
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|4715911|gb|AU057027.1|AU057027
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58596407|gb|CK006935.1|CK006935
EST:     AAACGTATCGAAAGTGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCGGTTCCTTTCGCCAGT
genomic: AAACGTATCGAAA-TGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88313297|gb|CI594927.1|CI594927
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58663811|gb|CK052497.1|CK052497
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88453324|gb|CI565766.1|CI565766
EST:     TAAAGGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88574722|gb|CI666491.1|CI666491
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|12622713|gb|AU172926.1|AU172926
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58675409|gb|CK064096.1|CK064096
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58595504|gb|CK006032.1|CK006032
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58666605|gb|CK055291.1|CK055291
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|4880424|gb|AU064723.1|AU064723
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58596723|gb|CK007251.1|CK007251
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58687982|gb|CK076669.1|CK076669
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|4880538|gb|AU064837.1|AU064837
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58598047|gb|CK008575.1|CK008575
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58590655|gb|CF988963.1|CF988963
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGGTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88406334|gb|CI596461.1|CI596461
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58669012|gb|CK057698.1|CK057698
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88340153|gb|CI650600.1|CI650600
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|25797892|gb|CA753853.1|CA753853
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58601031|gb|CK011559.1|CK011559
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88431567|gb|CI579684.1|CI579684
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88354075|gb|CI636273.1|CI636273
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58597601|gb|CK008129.1|CK008129
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|58590858|gb|CF989166.1|CF989166
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTGCGTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTT-CCTTTCGCCAGT
EST: gi|88375222|gb|CI680981.1|CI680981
EST:     TTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|29684974|gb|CB681249.1|CB681249
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|29658996|gb|CB655271.1|CB655271
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88577893|gb|CI674506.1|CI674506
EST:     TTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
EST: gi|88569829|gb|CI661004.1|CI661004
EST:     TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCG                         GCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
genomic: TAAACGTATCGAAATGGAGCACATCGCGAGGTTCTTCTTTGGAGTTTCCGgtgagtgtgc ... cgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttttacactactgtgaattcgttctaagttttttgttggctccgttttccagGCAATGTCATCGCTCTCTTCCTGTTCCTTTCGCCAGT
                                          ctccgttttcc  CT-rich tract
                           taagtttttt  TA-rich tract