1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctcttccttcgtcctctgtggccgcattggattgttttcttttgcctcggtgaactccatgctcacacgaatcctcccttgtttcttgctccgatttcagATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGAGACCGGAGAGCCATAGCTGACGGCTCGGGGGAAGATTCAGGTGGGCTCG
species | Oryza sativa |
transcript | LOC_Os01g65780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGACGCCGGGGCGCGCCCGTCGGTGCTCCCAAGTCCGCCTTCTCTGCGG ATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGAEST: gi|29630115|gb|CB635124.1|CB635124
genomic: CCGACGCCGGGGCGCGCCCGTCGGTGCTCCCAAGTCCGCCTTCTCTGCGGgtgcgtgtgc ... ccgatttcagATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGA
EST: CCGACGCCGGGGCGCGCCCGTCGGTGCTCCCAAGTCCGCCTTCTCTGCGG ATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGAEST: gi|33794578|gb|CF323176.1|CF323176
genomic: CCGACGCCGGGGCGCGCCCGTCGGTGCTCCCAAGTCCGCCTTCTCTGCGGgtgcgtgtgc ... ccgatttcagATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGA
EST: CCGACGCCGGGGCGCGCCCGTCGGTGCTCCCAAGTCCGCCTTCTCTGCGG ATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGA
genomic: CCGACGCCGGGGCGCGCCCGTCGGTGCTCCCAAGTCCGCCTTCTCTGCGGgtgcgtgtgc ... ccgatttcagATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGA
ctcggtgaactccatgctcacacgaatcctcccttgtttcttgctccgatttcagATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGAGACCGGAGAGCCATAGCTGACGGCTCGGGGGAAGATTCAGGTGGGCTCG
tgctcac putative branch site (score: 6)
tcctcccttgtttctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttccttcgtcctctgtggccgcattggattgttttcttttgcctcggtgaactccatgctcacacgaatcctcccttgtttcttgctccgatttcagATGAGAAGCTGCTCCACCGCGGCGGCGACAGTGTGGTCGGCCACCGCCTGAGACCGGAGAGCCATAGCTGACGGCTCGGGGGAAGATTCAGGTGGGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - gccgcat
- - - - - - - - - - - - - - - - - - - - - tgcctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgaa