1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtaaccgaacagatcactccaacttccctccgaactgaacttttcgccatcggtcaggctactaaatttcgtctgtttttctttttctttccgttgtgttgcgaagCGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGCGCGGTGCGACAACACGTCGGCGACGGTGCTCATGCTGGCGTTCAGCATC
species | Oryza sativa |
transcript | LOC_Os01g65660.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGT CGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGCEST: gi|88451924|gb|CI694702.1|CI694702
genomic: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGTgtgagtaacc ... tgttgcgaagCGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGC
EST: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGT CGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGCEST: gi|88582065|gb|CI699295.1|CI699295
genomic: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGTgtgagtaacc ... tgttgcgaagCGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGC
EST: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGT CGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGCEST: gi|88382775|gb|CI682667.1|CI682667
genomic: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGTgtgagtaacc ... tgttgcgaagCGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGC
EST: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGT CGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGC
genomic: CTGTGGGGCACCATGGTCGGCTACACAATCACCGCAACCATAAGCATGGTgtgagtaacc ... tgttgcgaagCGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGC
ggtcaggctactaaatttcgtctgtttttctttttctttccgttgtgttgcgaagCGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGCGCGGTGCGACAACACGTCGGCGACGGTGCTCATGCTGGCGTTCAGCATC
tactaaa putative branch site (score: 1)
tttcgtctgtttttct CT-rich tract
tttttctttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaccgaacagatcactccaacttccctccgaactgaacttttcgccatcggtcaggctactaaatttcgtctgtttttctttttctttccgttgtgttgcgaagCGCGATCAGGAGGTCGGATTGCATCCATCGGAACGGCGCCGGCGCCGCCGCGCGGTGCGACAACACGTCGGCGACGGTGCTCATGCTGGCGTTCAGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG