1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctaaacaggccatgggagttgggctgggattaagaattgagaattgttttggttggcttgcgccggcggcggttccggttaactgggtttgtttttgcagGGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCGGCGTGCTGGCGCTGGCGTGGAGCGTGGCGCAGCTGGGTTGGGTGGCCGG
species | Oryza sativa |
transcript | LOC_Os01g65660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGAACGCCGCACCGGAAGACGTCGAGAGCGGCGAGCACGAGCGGACAG GGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCGEST: gi|88423122|gb|CI613423.1|CI613423
genomic: CAAGAACGCCGCACCGGAAGACGTCGAGAGCGGCGAGCACGAGCGGACAGgtgcgtgttc ... gtttttgcagGGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCG
EST: CAAGAACGCCGCACCGGAAGACGTCGAGAGCGGCGAGCACGAGCGGACAG GGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCGEST: gi|29641091|gb|CB646098.1|CB646098
genomic: CAAGAACGCCGCACCGGAAGACGTCGAGAGCGGCGAGCACGAGCGGACAGgtgcgtgttc ... gtttttgcagGGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCG
EST: CAAGAACGCCGCACCGGAAGACGTCGAGAGCGGCGAGCACGAGCGGACAG GGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCG
genomic: CAAGAACGCCGCACCGGAAGACGTCGAGAGCGGCGAGCACGAGCGGACAGgtgcgtgttc ... gtttttgcagGGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCG
gttttggttggcttgcgccggcggcggttccggttaactgggtttgtttttgcagGGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCGGCGTGCTGGCGCTGGCGTGGAGCGTGGCGCAGCTGGGTTGGGTGGCCGG
ggttaac putative branch site (score: 3)
tttgttttt putative PPT
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaacaggccatgggagttgggctgggattaagaattgagaattgttttggttggcttgcgccggcggcggttccggttaactgggtttgtttttgcagGGACGGTATGGACGGCGACGGCGCACATTGTTACGGCGGTGATCGGCTCCGGCGTGCTGGCGCTGGCGTGGAGCGTGGCGCAGCTGGGTTGGGTGGCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - gccatgg
- - - - - - - - - -tgggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggcggc