1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgattgctgtcacaatccttttgcaaaagagaagaaaaaaattcaatcctacagaagcagtgatgtaatcttgcgcgatgccatttgtttggttgcagGATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGAACGACAACAACCAGGTGTGCGGCAAGCGCCACAGCTGCTGCCTCCGCTG
species | Oryza sativa |
transcript | LOC_Os01g65600.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGG GATGGAGTGGTCAEST: gi|58666751|gb|CK055437.1|CK055437
genomic: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagct ... ttggttgcagGATGGAGTGGTCA
EST: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGG GATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGAEST: gi|58674427|gb|CK063113.1|CK063113
genomic: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagct ... ttggttgcagGATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGA
EST: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGG GATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGA
genomic: GGATGTGCTCCGATCGCGATCTGTGTATTGTGACCAGTGCAGAGTCGTGGgtgagtagct ... ttggttgcagGATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGA
caatcctacagaagcagtgatgtaatcttgcgcgatgccatttgtttggttgcagGATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGAACGACAACAACCAGGTGTGCGGCAAGCGCCACAGCTGCTGCCTCCGCTG
tttgttt CT-rich tract
atttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgattgctgtcacaatccttttgcaaaagagaagaaaaaaattcaatcctacagaagcagtgatgtaatcttgcgcgatgccatttgtttggttgcagGATGGAGTGGTCACCCGGTCTGTGGGAAGCGGTACCATTTCATCATCGAGAACGACAACAACCAGGTGTGCGGCAAGCGCCACAGCTGCTGCCTCCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - tgctgtc
- - - - - - - - - - ttttgca
- - - - - - - - - - - - - -aaagagaa
- - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -cctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgatgcc