1 5' 3' | 2 5' 3' | 3 5' 3' |
gttcgtcctcggtacgcccaatctccccctcctccccgaaccccaactcccgaggatcgattgagtgaaattttgtggattttggatgtgaaaagGGGTGGAGATCGCGGAGAGGTTCGCGTACCACGGCGTGTCGGCGAACCTGATCAGCTACCTGACGGGACCGCTGGGGGAGTCGACGGCGGGGGCGGCGGC
species | Oryza sativa |
transcript | LOC_Os01g65100.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29657453|gb|CB653728.1|CB653728
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29657453|gb|CB653728.1|CB653728
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29681953|gb|CB678228.1|CB678228
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29681953|gb|CB678228.1|CB678228
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29681953|gb|CB678228.1|CB678228
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29617558|gb|CB622570.1|CB622570
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29617558|gb|CB622570.1|CB622570
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29617558|gb|CB622570.1|CB622570
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29632212|gb|CB637221.1|CB637221
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAAT GGGTGGAGATCGCGGAGAGGTTCGCGTACCACGGCGTGTCGGCGAACCTGAEST: gi|58587513|gb|CF985821.1|CF985821
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATgttcgtcctc ... atgtgaaaagGGGTGGAGATCGCGGAGAGGTTCGCGTACCACGGCGTGTCGGCGAACCTGA
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|58587513|gb|CF985821.1|CF985821
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|58587513|gb|CF985821.1|CF985821
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29677445|gb|CB673720.1|CB673720
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29677445|gb|CB673720.1|CB673720
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29677445|gb|CB673720.1|CB673720
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29660045|gb|CB656320.1|CB656320
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29660045|gb|CB656320.1|CB656320
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29660045|gb|CB656320.1|CB656320
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29674560|gb|CB670835.1|CB670835
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29674560|gb|CB670835.1|CB670835
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCTEST: gi|29674560|gb|CB670835.1|CB670835
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
EST: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAATGTTCGTCCT
genomic: CGCGGCCGCCCGGCCTCCCGCGCCTCCACCGGCCGCTGGTCCGCCGCAA---------Tgttcgtcctc ... at
ccccaactcccgaggatcgattgagtgaaattttgtggattttggatgtgaaaagGGGTGGAGATCGCGGAGAGGTTCGCGTACCACGGCGTGTCGGCGAACCTGATCAGCTACCTGACGGGACCGCTGGGGGAGTCGACGGCGGGGGCGGCGGC
tgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcctcggtacgcccaatctccccctcctccccgaaccccaactcccgaggatcgattgagtgaaattttgtggattttggatgtgaaaagGGGTGGAGATCGCGGAGAGGTTCGCGTACCACGGCGTGTCGGCGAACCTGATCAGCTACCTGACGGGACCGCTGGGGGAGTCGACGGCGGGGGCGGCGGC
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