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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaatttgcaaaaacagttgtgttcaataggaatgagttttatgcacttcttaaaatttcatgtatttatttcattcttagtttggtgtgttttgtgcagGCATGCTGCGCTGTTCTTCAAAGTTGGGTGTCAAGAAAATTTATGACTGGATGGTACATCTTTGACAGGAACCAAGTTAAGCATGTTACCAAACAAAAAG

Basic information

species Oryza sativa
transcript LOC_Os01g64780.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64780.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G149662_T01 (Zea mays), 3'ss of exon 1
-taaatttgcaaaaacagttgtgttcaataggaatgagttttatgcacttcttaaaatttcatgtatttatttcattcttagtttggtgt-gttttgtgcagGCATGCTGCGCTGTTCTTCAAAGTTGGGTGTCAAGAAAATTTATGACTGGATGGTACATCTTTGACAGGAACCAAGTTAAGCATGTTACCAAACAAAAAG
  |  | | || ||    ||    || | |  ||||   |   |         | |  || ||  | ||  ||  | ||| ||      |  || ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||                                               
gcacttatacacaatacattagtctctaaaacaatgtactaagtctgagaaacatacctttat--acttgatttgtactttgtccaccattattctgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAGTTTATGACTGGATG-----------------------------------------------

upper sequence: LOC_Os01g64780.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G046098_T02 (Zea mays), 3'ss of exon 1
-taaatttgcaaaaacagttgtgttcaataggaatgagttt--tatgcacttcttaaaatttcatgtatttatttcattcttagtttggtgtgttttgtgcagGCATGCTGCGCTGTTCTTCAAAGTTGGGTGTCAAGAAAATTTATGACTGGATGGTACATCTTTGACAGGAACCAAGTTAAGCATGTTACCAAACAAAAAG
  | |||   ||         | ||    |   || | |||  ||||| |    | |    | |   || |  |||||  |||   |||| | |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||                                               
gcatattgataagcctttaattattttgcaaacataactttattatgcgcagactgag---tgacaaatatcgttcatggttaacctggtatattttgtgcagGCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGATG-----------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcttaaaatttcatgtatttatttcattcttagtttggtgtgttttgtgcagGCATGCTGCGCTGTTCTTCAAAGTTGGGTGTCAAGAAAATTTATGACTGGATGGTACATCTTTGACAGGAACCAAGTTAAGCATGTTACCAAACAAAAAG
     ttaaaatttcatgtat  TA-rich tract