Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88552429|gb|CI482435.1|CI482435EST: GCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88506337|gb|CI433843.1|CI433843EST: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88529735|gb|CI458076.1|CI458076EST: GCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|89163418|gb|CI100308.1|CI100308EST: AAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: AAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88471442|gb|CI408713.1|CI408713EST: GCATTTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88521712|gb|CI448379.1|CI448379EST: GCATTTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|8528361|gb|AU093176.1|AU093176EST: GCNTCTACGTCAAGNTCAGGCCCGACCGNGAG-TCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88554838|gb|CI485047.1|CI485047EST: TCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: TCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88523672|gb|CI451520.1|CI451520EST: TCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: TCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88994793|gb|CI036374.1|CI036374EST: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88547915|gb|CI478246.1|CI478246EST: TCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: TCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|12622952|gb|AU173165.1|AU173165EST: GCATNTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTNTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88526966|gb|CI455068.1|CI455068EST: CGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: CGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|25800894|gb|CA756855.1|CA756855EST: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88529062|gb|CI456389.1|CI456389EST: GCATGTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|88266873|gb|CI368649.1|CI368649EST: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|86530098|gb|CI170304.1|CI170304EST: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|86432320|gb|CI085931.1|CI085931EST: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
EST:
gi|86418840|gb|CI053641.1|CI053641EST: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCAT GCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
genomic: GCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
74 (upstream exon),
65 (downstream exon)
Score:
21GATCGCGGTGAAGGAGCCGCTGGATCTGATCAGGCTCAGCCTCGACGAGCGCATCTACGTCAAGCTCAGGTCCGACCGCGAGCTCCGCGGCAAGCTCCATgtatgtaaac ... ctttatccagGCATACGATCAACATTTAAACATGATTCTTGGAGATGTTGAGGAGATCGTGACAACAGTTGAGATTGACGATGAGACATATGAAGAAATTGTGCGC
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