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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctcactgagcttttgctctctctctctctctctctctctctctccttctctcacaaacatgcgcccccgcgccgatgaagatcatggcccgccggcctatctgccgatgctaacaccgtggggttttctctgtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT

Basic information

species Oryza sativa
transcript LOC_Os01g64670.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218483273|gb|FG944903.1|FG944903
EST:     GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCG                         GCGCTGACGCTCCGGCTGTGTTCAACGTT
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCGgtgagctcac ... gtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT
EST: gi|88414803|gb|CI604161.1|CI604161
EST:     GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCG                         GCGCTGACGCTCCGGCTGTGTTCAACGTT
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCGgtgagctcac ... gtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT
EST: gi|218485453|gb|FG947366.1|FG947366
EST:     GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCG                         GCGCTGACGCTCCGGCTGTGTTCAACGTT
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCGgtgagctcac ... gtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT
EST: gi|218503045|gb|FG970333.1|FG970333
EST:     GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCG                         GCGCTGACGCTCCGGCTGTGTTCAACGTT
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCGgtgagctcac ... gtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT
EST: gi|88395925|gb|CI593127.1|CI593127
EST:     GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCG                         GCGCTGACGCTCCGGCTGTGTTCAACGTT
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCGgtgagctcac ... gtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT
EST: gi|218499150|gb|FG960130.1|FG960130
EST:     GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCG                         GCGCTGACGCTCCGGCTGTG-TCAACGTT
genomic: GCTGTCGCGGAGGTCCGTCGCCGCGCACCCCTGGCACGACCTCGACACCGgtgagctcac ... gtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcccgccggcctatctgccgatgctaacaccgtggggttttctctgtatttgcagGCGCTGACGCTCCGGCTGTGTTCAACGTT
                     tgctaac  putative branch site (score: 1)
 ttttctctgtattt  putative PPT
 tgtattt  TA-rich tract