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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgtacctggcaataactgtcatctttctcagtttcttgtctctgagattgagatagtgaggactgaggacttgcttggtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC

Basic information

species Oryza sativa
transcript LOC_Os01g64660.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64660.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G836250_T02 (Zea mays), 3'ss of exon 1
gcaagtgtacctggcaa-taactgtcatctttctcagtttcttgtctctgagattgagatagtgaggactgaggacttgcttggtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAGGCTCTCGTCAGCAGCGGCCGCACC
|||||||  |    |   || ||    | |   ||||     | |    ||||| | ||   ||    | |  | |||| ||| |  ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
gcaagtgcgctgtacggctagctagtttttccttcagagagat-tgatcgagat-gtgacgatg----ccgctgccttggttgct-cgac-agGGAGAGGAGCAGAAGAAGCTGGACGTCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687204|gb|CK075891.1|CK075891
EST:     AGGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTAGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: AGGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
EST: gi|88370994|gb|CI595106.1|CI595106
EST:     AGGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG                         GGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG
genomic: AGGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGgcaagtgtac ... gtgtgaccagGGAGAGGAGCAGAAGAAGCTGGACGTGCTGTCCAACGAGGTGTTCGTCAAG