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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacacgaatcctcccgttgtttcatcgttaggcgtacggatctctcggttctcactctactgattggcacgctgaacaaaacttctcgggttgtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG

Basic information

species Oryza sativa
transcript LOC_Os01g64660.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682613|gb|CB678888.1|CB678888
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAT
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88346774|gb|CI657325.1|CI657325
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88340194|gb|CI652543.1|CI652543
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGGGA
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGGGA
EST: gi|88575674|gb|CI669819.1|CI669819
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGNGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30227308|gb|CB965200.1|CB965200
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88372212|gb|CI641847.1|CI641847
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGGGA
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAGGGA
EST: gi|88448534|gb|CI693922.1|CI693922
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88340388|gb|CI659594.1|CI659594
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88320093|gb|CI639421.1|CI639421
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30227243|gb|CB965135.1|CB965135
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|14980846|gb|BI305524.1|BI305524
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88321676|gb|CI672817.1|CI672817
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30226581|gb|CB964473.1|CB964473
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30228705|gb|CB966595.1|CB966595
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|218478896|gb|FG959665.1|FG959665
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30228417|gb|CB966307.1|CB966307
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30226528|gb|CB964420.1|CB964420
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCA-CGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|33663175|gb|CF294142.1|CF294142
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88331152|gb|CI639563.1|CI639563
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88338555|gb|CI645809.1|CI645809
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|44676478|gb|CR289912.1|CR289912
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88329187|gb|CI653094.1|CI653094
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88381754|gb|CI682426.1|CI682426
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88370994|gb|CI595106.1|CI595106
EST:     GCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: GCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30227645|gb|CB965537.1|CB965537
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGNC-GGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88341640|gb|CI641392.1|CI641392
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88576289|gb|CI670434.1|CI670434
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88408548|gb|CI686045.1|CI686045
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88349794|gb|CI634329.1|CI634329
EST:     TCTCCCACATCGTGCTTGGCTGGAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88571013|gb|CI662386.1|CI662386
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88570906|gb|CI662279.1|CI662279
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88359332|gb|CI679859.1|CI679859
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88326670|gb|CI658392.1|CI658392
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88343123|gb|CI641649.1|CI641649
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88390100|gb|CI590613.1|CI590613
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGGCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30228348|gb|CB966239.1|CB966239
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88336728|gb|CI643903.1|CI643903
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88430397|gb|CI567416.1|CI567416
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGAC-AACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88388836|gb|CI592724.1|CI592724
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGACGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|30228486|gb|CB966376.1|CB966376
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGT-CAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88588511|gb|CI706332.1|CI706332
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|88347733|gb|CI655086.1|CI655086
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|86848574|gb|CI293902.1|CI293902
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
EST: gi|86829513|gb|CI286720.1|CI286720
EST:     TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAG                         GCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
genomic: TCTCCCACATCGTGCTTGGCTGCAAGTTCGTCGCCTCCGCCGTCAACAAGgtcacacgaa ... gtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctcactctactgattggcacgctgaacaaaacttctcgggttgtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG
          tactgat  putative branch site (score: 2)
                           aacaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcacacgaatcctcccgttgtttcatcgttaggcgtacggatctctcggttctcactctactgattggcacgctgaacaaaacttctcgggttgtgcatgcagGCCGGGCTCGCCAAGCTCATCGGGCTGGCCGGCGAGACCAACGTTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA