1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttcgtgagcacgcagaatcctaagcgttcgtcgcggcgcccggccgtgcccgaggccagaggcccagaggtgtgatctctacttcccccgcgtgtgtgcagAGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACGTACTACCTCTCCATGGAGTACCTGCAGGGCCGCGCGCTCACCAACGCCG
species | Oryza sativa |
transcript | LOC_Os01g63270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGATCACCTCGTCCAG AGATGGAACGAGACGTACTTGCATTTCCACAAGATGGATCCGAAGCAGACGEST: gi|88718360|gb|CI741449.1|CI741449
genomic: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGATCACCTCGTCCAGgttcgtgagc ... gtgtgtgcagAGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACG
EST: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGATCACCTCGTCCAG AGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACGEST: gi|29625767|gb|CB630778.1|CB630778
genomic: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGATCACCTCGTCCAGgttcgtgagc ... gtgtgtgcagAGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACG
EST: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGACCACCTCGTCCAG AGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACGEST: gi|86909059|gb|CI302711.1|CI302711
genomic: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGATCACCTCGTCCAGgttcgtgagc ... gtgtgtgcagAGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACG
EST: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGATCACCTCGTCCAG AGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACG
genomic: AGCAGGCCTTCTACTCCACCGCCGAGAGCGTCCGCGATCACCTCGTCCAGgttcgtgagc ... gtgtgtgcagAGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgagcacgcagaatcctaagcgttcgtcgcggcgcccggccgtgcccgaggccagaggcccagaggtgtgatctctacttcccccgcgtgtgtgcagAGATGGAACGAGACGTACTTGCATTTCCACAAGACGGATCCGAAGCAGACGTACTACCTCTCCATGGAGTACCTGCAGGGCCGCGCGCTCACCAACGCCG
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