Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCG

Basic information

species Oryza sativa
transcript LOC_Os01g62420.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62420.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 1
gtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCG
||||||   ||||| || ||     |   ||    |||   | |    ||   | |  ||  | |    || | |  || |||   | |   ||||   | ||||    | | |||||||| || || || |||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||||||||
gtaagt---ccccctaggacccag-gctccaggcaccaccgttctctcgatttgaattcgacgttacgcagagttttggtttgatctct---gatggcatccgct-cccccgtgtgcagAACGGTACTGGCGAGGACGTGAAGAAGATCGTCACCGTGCTCAACCAAGCCGAGGTGCCCTCTGAAGACGTCGTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33666777|gb|CF297744.1|CF297744
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33693438|gb|CF321677.1|CF321677
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33793081|gb|CF322423.1|CF322423
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692885|gb|CF321124.1|CF321124
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692149|gb|CF320388.1|CF320388
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|88575287|gb|CI669432.1|CI669432
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|29669431|gb|CB665706.1|CB665706
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33694018|gb|CF322257.1|CF322257
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689964|gb|CF318203.1|CF318203
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|2312292|gb|C28447.1|C28447
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690687|gb|CF318926.1|CF318926
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33828594|gb|CF340117.1|CF340117
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33827559|gb|CF339596.1|CF339596
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58679577|gb|CK068264.1|CK068264
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690113|gb|CF318352.1|CF318352
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692177|gb|CF320416.1|CF320416
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692251|gb|CF320490.1|CF320490
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33688513|gb|CF316752.1|CF316752
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33685938|gb|CF314177.1|CF314177
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689979|gb|CF318218.1|CF318218
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|25800835|gb|CA756796.1|CA756796
EST:     GGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: GGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|88722774|gb|CI746284.1|CI746284
EST:     ATCCATCCATGGCTGCCAGGAAGTCCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692667|gb|CF320906.1|CF320906
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|88391559|gb|CI600748.1|CI600748
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|86830034|gb|CI288672.1|CI288672
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|427784|gb|D23922.1|D23922
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690102|gb|CF318341.1|CF318341
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689283|gb|CF317522.1|CF317522
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGAGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33691585|gb|CF319824.1|CF319824
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33687151|gb|CF315390.1|CF315390
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGA-GCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58683989|gb|CK072676.1|CK072676
EST:     TCCATCCATGNGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: TCCATCCATG-GCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33826932|gb|CF339275.1|CF339275
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33828691|gb|CF340165.1|CF340165
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692942|gb|CF321181.1|CF321181
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33829645|gb|CF340645.1|CF340645
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33828383|gb|CF340010.1|CF340010
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33686817|gb|CF315056.1|CF315056
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAAT-GGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGC
EST: gi|33691808|gb|CF320047.1|CF320047
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58669404|gb|CK058090.1|CK058090
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33689638|gb|CF317877.1|CF317877
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|163927744|gb|EG712492.1|EG712492
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33693863|gb|CF322102.1|CF322102
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTTTTTTATGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33685357|gb|CF313596.1|CF313596
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33801873|gb|CF326808.1|CF326808
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33692386|gb|CF320625.1|CF320625
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33688347|gb|CF316586.1|CF316586
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33691552|gb|CF319791.1|CF319791
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33688724|gb|CF316963.1|CF316963
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|33690870|gb|CF319109.1|CF319109
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|58674808|gb|CK063495.1|CK063495
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
EST: gi|5003199|gb|AU068308.1|AU068308
EST:     ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGC                         AATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC
genomic: ATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 65 (downstream exon)
Score: 21

CTCCACGAAAACCCTCTGCCTCCTTCGCTCGCTGCACCCTCGTCTCGGCGATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattc ... ctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcagAATGGGACAGGGGAGGACGTGAAGAAGATCGTCACCGTCCTCAACGAGGCCGAGGTGCCCTCCGAGGACGTCGTCG
 tgctgat  putative branch site (score: 21)
                     ttttat  TA-rich tract