1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcagcctccgagcgccgcctctctctcacacacacgagcgcttccttactcgagatctctcgcgcccctctccgcttcgattctctgtttgttgatcgattttggtttgttccgtcgccttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCGGGGCTCTTCGTCGGCATCAACAAGGGCCACGTCGTCACCAAGCGCGAGC
species | Oryza sativa |
transcript | LOC_Os01g62350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAG GTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCGEST: gi|86529019|gb|CI169225.1|CI169225
genomic: CGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAGgtacgcagcc ... ttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCG
EST: GCTGTCGCCGATCCAAG GTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCGEST: gi|88315091|gb|CI610150.1|CI610150
genomic: GCTGTCGCCGATCCAAGgtacgcagcc ... ttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCG
EST: GGACGCAGCCGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAG GTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCGEST: gi|87016064|gb|CI281807.1|CI281807
genomic: GGACGCAGCCGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAGgtacgcagcc ... ttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCG
EST: CCGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAG GTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCGEST: gi|88369733|gb|CI680402.1|CI680402
genomic: CCGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAGgtacgcagcc ... ttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCG
EST: GGACGCAGCCGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAG GTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCGEST: gi|58594171|gb|CF992479.1|CF992479
genomic: GGACGCAGCCGGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAGgtacgcagcc ... ttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCG
EST: GGCGGCTTAGGG-TTTGTAGCTGTCGCCGATCCAAG GTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCG
genomic: GGCGGCTTAGGGTTTTGTAGCTGTCGCCGATCCAAGgtacgcagcc ... ttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCG
cttcgattctctgtttgttgatcgattttggtttgttccgtcgccttcgccgcagGTCCGAGGAGCGAGGAGGAGATCCGCCATGGCGCCGCCGCAGCCCAAGTCGGGGCTCTTCGTCGGCATCAACAAGGGCCACGTCGTCACCAAGCGCGAGC
tgttgat putative branch site (score: 55)
tcgccttc putative PPT
atttt TA-rich tract