1 5' 3' |
...ttctatttttactacagtttgtgtttgcatttcaattcttaaatgccaattctccactccatgttctgcactgatccatgcacactttcgatccttgcagTGATGTTCAGGACGCCAAGCTTCATGCCGGTCGCGACAAATAACGCCAGCTACTACCCGCAGCAGCAGACGCCGTTGCTGTACCCAGGGATGGAAGTGTG
species | Oryza sativa |
transcript | LOC_Os01g62310.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ccaattctccactccatgttctgcactgatccatgcacactttcgatccttgcagTGATGTTCAGGACGCCAAGCTTCATGCCGGTCGCGACAAATAACGCCAGCTACTACCCGCAGCAGCAGACGCCGTTGCTGTACCCAGGGATGGAAGTGTG
cactgat putative branch site (score: 5)
tccttgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctatttttactacagtttgtgtttgcatttcaattcttaaatgccaattctccactccatgttctgcactgatccatgcacactttcgatccttgcagTGATGTTCAGGACGCCAAGCTTCATGCCGGTCGCGACAAATAACGCCAGCTACTACCCGCAGCAGCAGACGCCGTTGCTGTACCCAGGGATGGAAGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - aaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccatgc