1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcagaaaaccatagattttactggtggttatatgatttcagctgatcttttacagccattcgtgtcctgaacctttggtgtctgctctgatgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGGAAATTGGTTCAGTGCTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGAT
species | Oryza sativa |
transcript | LOC_Os01g61720.10 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGGEST: gi|58683061|gb|CK071748.1|CK071748
genomic: GAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGGEST: gi|88360261|gb|CI611980.1|CI611980
genomic: GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGGEST: gi|29638610|gb|CB643619.1|CB643619
genomic: GGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
EST: TTCAGTTGGGCGAGGAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAG GCTTTAGCTGAAGACACAATAAAGGAACACCNNNNNNNTGGGTAAGAAAGG
genomic: TTCAGTTGGGCGAGGAAGGTGAGCGGCTTTCGGTGGTTGGTTGCTTTGAGgtgaaagctc ... atgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGG
atcttttacagccattcgtgtcctgaacctttggtgtctgctctgatgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGGAAATTGGTTCAGTGCTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGAT
ctctgat putative branch site (score: 4)
tgctttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagaaaaccatagattttactggtggttatatgatttcagctgatcttttacagccattcgtgtcctgaacctttggtgtctgctctgatgctttcagGCTTTAGCTGAAGACACAATAAAGGAACACCAAAAAAATGGGTAAGAAAGGAAATTGGTTCAGTGCTGTCAAGAAAGTCTTCAGCTCATCCGATCCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA