1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtgcatgtgtacgcgcggcggccggcagggccggccgccttcttcgtagtaagcacacgtttgcttatcttgtgttctctttactgttgcataggccagCTAGCTTTTGCTTGCAATGGCGGACTGCATGCAGGAGTGGCCGGAGCCCGTGGTCCGCGTGCAGGCGCTCGCCGATAGCGGCCTGGAGGCCATCCCGCGC
species | Oryza sativa |
transcript | LOC_Os01g61610.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58693225|gb|CK081912.1|CK081912
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58693225|gb|CK081912.1|CK081912
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58586887|gb|CF985195.1|CF985195
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTAGACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58586887|gb|CF985195.1|CF985195
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTAGACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58586887|gb|CF985195.1|CF985195
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTAGACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58593317|gb|CF991625.1|CF991625
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGGAGACAGTACACTCCCCGGGTTATCTCTCCCAGCAC CTAGCTTTTGCTTGCAATGGCGGACTGCATGCAGGAGTGGCCGGAGCCCGTEST: gi|58590089|gb|CF988397.1|CF988397
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCACgtatgtttat ... cataggccagCTAGCTTTTGCTTGCAATGGCGGACTGCATGCAGGAGTGGCCGGAGCCCGT
EST: AGCTCAGTGAGCAGTAGACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58590089|gb|CF988397.1|CF988397
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTAGACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58590089|gb|CF988397.1|CF988397
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTAGACAGTACACTCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58593042|gb|CF991350.1|CF991350
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTACACAGTAGACGCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58593042|gb|CF991350.1|CF991350
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTACACAGTAGACGCCCCGGGTTATCTCTCCCAGCACGCCEST: gi|58593042|gb|CF991350.1|CF991350
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
EST: AGCTCAGTGAGCAGTACACAGTAGACGCCCCGGGTTATCTCTCCCAGCACGCC
genomic: AGCTCAGTGAGCAGTACACAGTACACTCCCCGGGTTATCTCTCCCAGCA---Cgtatgtttat ... cataggcc
cgtagtaagcacacgtttgcttatcttgtgttctctttactgttgcataggccagCTAGCTTTTGCTTGCAATGGCGGACTGCATGCAGGAGTGGCCGGAGCCCGTGGTCCGCGTGCAGGCGCTCGCCGATAGCGGCCTGGAGGCCATCCCGCGC
ttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcatgtgtacgcgcggcggccggcagggccggccgccttcttcgtagtaagcacacgtttgcttatcttgtgttctctttactgttgcataggccagCTAGCTTTTGCTTGCAATGGCGGACTGCATGCAGGAGTGGCCGGAGCCCGTGGTCCGCGTGCAGGCGCTCGCCGATAGCGGCCTGGAGGCCATCCCGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- tgcatgt
- - - - - - - - cggcggc
- - - - - - - - - - - - - - - - cggccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttg