1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcgcagaagcagtacatcatgatctgcttccttagaaggaactggtttccattgctttgatatgtagttaggattaattgttcactcttttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCAGAGGCTCTTCTTCCGTGGGAAGGAGAAGAGTGACAATGAGTTCCTGCA
species | Oryza sativa |
transcript | LOC_Os01g61500.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|88329886|gb|CI651563.1|CI651563
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|88575122|gb|CI666891.1|CI666891
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|88347936|gb|CI636029.1|CI636029
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|88422590|gb|CI571572.1|CI571572
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|218486310|gb|FG947933.1|FG947933
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGTGTAGAGCCTGAAAGGCEST: gi|88331182|gb|CI639593.1|CI639593
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCACGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|218494744|gb|FG957721.1|FG957721
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|88347937|gb|CI636030.1|CI636030
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|55410181|gb|CV722557.1|CV722557
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCEST: gi|88334385|gb|CI642630.1|CI642630
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
EST: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCG GTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
genomic: CCACGGCGCCTCCTTCCGCGACGTCGCCGTGCCGGCGCACTCCACCTTCGgtatgatcct ... ttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGC
gtttccattgctttgatatgtagttaggattaattgttcactcttttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCAGAGGCTCTTCTTCCGTGGGAAGGAGAAGAGTGACAATGAGTTCCTGCA
gattaat putative branch site (score: 9)
ttgttcactctttt CT-rich tract
attaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgcagaagcagtacatcatgatctgcttccttagaaggaactggtttccattgctttgatatgtagttaggattaattgttcactcttttgtatgaagGTGAATTGAAGGGGGTCCTTACCCAGGCAACTGGCGTAGAGCCTGAAAGGCAGAGGCTCTTCTTCCGTGGGAAGGAGAAGAGTGACAATGAGTTCCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - cagaagc
- - - - - - - - -tcatgat
- - - - - - - - - - - - -tgcttcc
- - - - - - - - - - - - - - - - - agaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgta