1 5' 3' | 2 5' 3' | 3 5' 3' |
...aactttttattgttgccgacgactaactgctatattgtgatggggcagctacttttgtgctatgtgctaactcaggatcctatttgaaattctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGGAAA
species | Oryza sativa |
transcript | LOC_Os01g60700.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAG CTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGEST: gi|58671448|gb|CK060134.1|CK060134
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... tctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
EST: TTCGCTTCCCCCGCGGTTGCGTTCCCGGAGCGGCGTTCCAGCGGCCACAG CTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGEST: gi|88403479|gb|CI573202.1|CI573202
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... tctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGCAGEST: gi|58610624|gb|CK038336.1|CK038336
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGG-C-CA-CAGgtgcggtctc ... tctgtagc
EST: TTCGCTTCCCCCGCGGTTGCGTTCCCGGAGCGGCGTTCCAGCGGCCACAG CTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGEST: gi|88405757|gb|CI609656.1|CI609656
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... tctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAG CTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGEST: gi|88426756|gb|CI584119.1|CI584119
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... tctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAG CTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGEST: gi|86876798|gb|CI309664.1|CI309664
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... tctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAG CTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGEST: gi|88389089|gb|CI595323.1|CI595323
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... tctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAG CTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... tctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAG
cagctacttttgtgctatgtgctaactcaggatcctatttgaaattctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGGAAA
tgctaac putative branch site (score: 10)
tatttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactttttattgttgccgacgactaactgctatattgtgatggggcagctacttttgtgctatgtgctaactcaggatcctatttgaaattctgtagcagCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - tgttgcc
- - - - - - - - - - - - aactgct
- - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgc