1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gacaactttttattgttgccgacgactaactgctatattgtgatggggcagctacttttgtgctatgtgctaactcaggatcctatttgaaattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGG
species | Oryza sativa |
transcript | LOC_Os01g60700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGG-C-CA- CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|58657615|gb|CK046295.1|CK046295
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCGTCCCCCGCGGTTGCGTTCCCGGAGCGGCGTTCCAGCGGCCACAG CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|88426756|gb|CI584119.1|CI584119
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAG C---TTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|88403479|gb|CI573202.1|CI573202
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAG CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|88317329|gb|CI627978.1|CI627978
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGG-C-CA- CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|88389089|gb|CI595323.1|CI595323
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGG-C-CA- CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|58671448|gb|CK060134.1|CK060134
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCTTCCCCCGCGGTTGCGTTCCCGGAGCGGCGTTCCAGCGG-C-CA- CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|58610624|gb|CK038336.1|CK038336
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCTTCCCCCGCGGTTGCGTTCCCGGAGCGGCGTTCCAGCGG-C-CA- CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCEST: gi|88405757|gb|CI609656.1|CI609656
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
EST: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGG-C-CA- CAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
genomic: TTCGCTTCCCCCGCGGTTGCGCTCCCGGAGCGGCGTTCCAGCGGCCACAGgtgcggtctc ... aattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCC
gggcagctacttttgtgctatgtgctaactcaggatcctatttgaaattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGG
tgctaac putative branch site (score: 9)
tatttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaactttttattgttgccgacgactaactgctatattgtgatggggcagctacttttgtgctatgtgctaactcaggatcctatttgaaattctgtagCAGCTTTCCCTCATTGTACACATGATGGGTTGCTTCACTGTCCTGAGATCCAAGAAGAAGAAGCCTCTTGCTCTCACCAAGAAATCGGTTGATGCAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
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- - - - - - -tgttgcc
- - - - - - - - - - - - - -aactgct
- - - - - - - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc